pcaMethods 1.14.0
Wolfram Stacklies
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/pcaMethods | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/pcaMethods.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'pcaMethods/DESCRIPTION' ... OK
* this is package 'pcaMethods' version '1.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pcaMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
kEstimateFast: no visible binding for global variable 'allVariables'
nni: no visible global function definition for 'exprs'
pca: no visible global function definition for 'exprs'
prep: no visible global function definition for 'exprs'
robustSvd: no visible binding for global variable 'verbose'
svdPca: no visible binding for global variable 'verbose'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating pcaMethods-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating pcaMethods-manual.tex ... OK
* checking pcaMethods-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/pcaMethods.Rcheck
---------- Making package pcaMethods ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package pcaMethods for lazy loading
Loading required package: MASS
Loading required package: pls
Attaching package: 'pls'
The following object(s) are masked from package:stats :
loadings
Creating a new generic function for "print" in "pcaMethods"
Creating a new generic function for "summary" in "pcaMethods"
Creating a new generic function for "fitted" in "pcaMethods"
installing man source files
installing indices
not zipping data
installing help
Note: unmatched right brace in 'nlpca' on or after line 60
Note: unmatched right brace in 'nlpca.Rd' on or after line 60
>>> Building/Updating help pages for package 'pcaMethods'
Formats: text html latex example chm
Q2 text html latex example chm
asExprSet text html latex chm
bpca text html latex example chm
checkData text html latex chm
class.nlpcaNet text html latex chm
class.nniRes text html latex chm
class.pcaRes text html latex chm
fitted.pcaRes text html latex chm
helix text html latex chm
kEstimate text html latex example chm
kEstimateFast text html latex example chm
llsImpute text html latex example chm
metaboliteData text html latex chm
metaboliteDataComplete text html latex chm
nipalsPca text html latex example chm
nlpca text html latex example chm
nni text html latex example chm
pca text html latex example chm
plotPcs text html latex example chm
plotR2 text html latex chm
ppca text html latex example chm
prep text html latex example chm
robustPca text html latex example chm
robustSvd text html latex example chm
slplot text html latex example chm
svdImpute text html latex example chm
svdPca text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "es\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\pcaMethods.Rcheck\00_pkg_src\pcaMethods\chm\pcaMethods.chm
HHC4016: Warning: Cannot open "es\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (pcaMethods)