multtest 1.18.0
Katherine S. Pollard
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/multtest | | Last Changed Rev: 28558 / Revision: 30966 | | Last Changed Date: 2007-11-07 23:08:50 -0800 (Wed, 07 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/multtest.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'multtest/DESCRIPTION' ... OK
* this is package 'multtest' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'multtest' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
boot.null: no visible global function definition for 'clusterApply'
boot.null: no visible global function definition for 'clusterApplyLB'
lmX : <anonymous>: no visible global function definition for 'rlm'
lmY : <anonymous>: no visible global function definition for 'rlm'
MTP: no visible global function definition for 'makeCluster'
MTP: no visible global function definition for 'clusterEvalQ'
MTP: no visible global function definition for 'stopCluster'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating multtest-Ex.R ... OK
* checking examples ... OK
* creating multtest-manual.tex ... OK
* checking multtest-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/multtest.Rcheck
---------- Making package multtest ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making Rpack.d from Rpack.c
making block_sampling_fixed.d from block_sampling_fixed.c
making bootloop.d from bootloop.c
making mt.d from mt.c
making pairt_sampling.d from pairt_sampling.c
making pairt_sampling_fixed.d from pairt_sampling_fixed.c
making random.d from random.c
making sampling.d from sampling.c
making sampling_fixed.d from sampling_fixed.c
making stat_func.d from stat_func.c
making stat_order.d from stat_order.c
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c Rpack.c -o Rpack.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c block_sampling_fixed.c -o block_sampling_fixed.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c bootloop.c -o bootloop.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c mt.c -o mt.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c pairt_sampling.c -o pairt_sampling.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c random.c -o random.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c sampling.c -o sampling.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c sampling_fixed.c -o sampling_fixed.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c stat_func.c -o stat_func.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -DUSEDOUBLE -DWINDOWS -O3 -Wall -c stat_order.c -o stat_order.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i multtest_res.rc -o multtest_res.o
gcc-sjlj -std=gnu99 -shared -s -o multtest.dll multtest.def Rpack.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o multtest_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lm -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package multtest for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: survival
Loading required package: splines
Creating a new generic function for "as.list" in "multtest"
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'multtest'
Formats: text html latex example chm
MTP-class text html latex example chm
MTP-methods text html latex chm
MTP text html latex example chm
boot.null text html latex example chm
fwer2gfwer text html latex example chm
get.index text html latex example chm
golub text html latex chm
meanX text html latex example chm
mt.internal text html latex chm
mt.maxT text html latex example chm
mt.plot text html latex example chm
mt.rawp2adjp text html latex example chm
mt.reject text html latex example chm
mt.sample.teststat text html latex example chm
mt.teststat text html latex example chm
ss.maxT text html latex example chm
wapply text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\multtest.Rcheck\00_pkg_src\multtest\chm\multtest.chm
HHC4016: Warning: Cannot open "\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (multtest)