makePlatformDesign 1.2.0
Benilton Carvalho
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/makePlatformDesign | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/makePlatformDesign.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'makePlatformDesign/DESCRIPTION' ... OK
* this is package 'makePlatformDesign' version '1.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'makePlatformDesign' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
makePDpackage.old: possible error in makeSNPenv(filename, seqfile,
annotfile, textCDF): unused argument(s) (textCDF)
readndfplex: no visible binding for global variable 'PROBE_CLASS'
writePackage: no visible binding for global variable 'verbose'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating makePlatformDesign-Ex.R ... OK
* checking examples ... OK
* creating makePlatformDesign-manual.tex ... OK
* checking makePlatformDesign-manual.tex ... OK
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/makePlatformDesign.Rcheck
---------- Making package makePlatformDesign ------------
adding build stamp to DESCRIPTION
making DLL ...
making matchprobes.d from matchprobes.c
making strutils.d from strutils.c
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c matchprobes.c -o matchprobes.o
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c strutils.c -o strutils.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include -i makePlatformDesign_res.rc -o makePlatformDesign_res.o
gcc-sjlj -std=gnu99 -shared -s -o makePlatformDesign.dll makePlatformDesign.def matchprobes.o strutils.o makePlatformDesign_res.o -Le:/biocbld/bbs-2.1-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'makePlatformDesign'
Formats: text html latex example chm
makePDpackage text html latex example chm
makePlatformDesign-internal text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.1-bioc\meat\makePlatformDesign.Rcheck\00_pkg_src\makePlatformDesign\chm\makePlatformDesign.chm
Compile time: 0 minutes, 0 seconds
3 Topics
36 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.1-bioc\meat\makePlatformDesign.Rcheck\00_pkg_src\makePlatformDesign\chm\makePlatformDesign.chm, 18,981 bytes
Compression decreased file by 2,054 bytes.
preparing package makePlatformDesign for lazy loading
Loading required package: affyio
Loading required package: oligo
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Loading required package: preprocessCore
Loading required package: AnnotationDbi
Loading required package: affxparser
Loading required package: oligoClasses
This is the oligo package
Attaching package: 'oligo'
The following object(s) are masked from package:oligoClasses :
calls,
calls<-,
callsConfidence,
callsConfidence<-,
cnConfidence,
cnConfidence<-,
copyNumber,
copyNumber<-
adding MD5 sums
* DONE (makePlatformDesign)