maigesPack 1.2.1
Gustavo H. Esteves
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/maigesPack | | Last Changed Rev: 27849 / Revision: 30966 | | Last Changed Date: 2007-10-08 12:10:09 -0700 (Mon, 08 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/maigesPack.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'maigesPack/DESCRIPTION' ... OK
* this is package 'maigesPack' version '1.2.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maigesPack' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating maigesPack-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating maigesPack-manual.tex ... OK
* checking maigesPack-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/maigesPack.Rcheck
---------- Making package maigesPack ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making Minfo.d from Minfo.c
making bootstrapT.d from bootstrapT.c
making register.d from register.c
making robustCorr.d from robustCorr.c
making stats.d from stats.c
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c Minfo.c -o Minfo.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c bootstrapT.c -o bootstrapT.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c register.c -o register.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c robustCorr.c -o robustCorr.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c stats.c -o stats.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i maigesPack_res.rc -o maigesPack_res.o
gcc-sjlj -std=gnu99 -shared -s -o maigesPack.dll maigesPack.def Minfo.o bootstrapT.o register.o robustCorr.o stats.o maigesPack_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package maigesPack for lazy loading
Loading required package: convert
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: limma
Loading required package: marray
Loading required package: graph
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'maigesPack'
Formats: text html latex example chm
MI text html latex example chm
activeMod text html latex example chm
activeModScoreHTML text html latex example chm
activeNet text html latex example chm
activeNetScoreHTML text html latex example chm
addGeneGrps text html latex example chm
addPaths text html latex example chm
bootstrapCor text html latex example chm
bootstrapMI text html latex example chm
bootstrapT text html latex example chm
boxplot-methods text html latex example chm
bracketMethods text html latex example chm
calcA text html latex example chm
calcW text html latex example chm
classifyKNN text html latex example chm
classifyKNNsc text html latex example chm
classifyLDA text html latex example chm
classifyLDAsc text html latex example chm
classifySVM text html latex example chm
classifySVMsc text html latex example chm
coerce-methods text html latex example chm
compCorr text html latex example chm
contrastsFitM text html latex chm
createMaigesRaw text html latex example chm
createTDMS text html latex chm
deGenes2by2BootT text html latex example chm
deGenes2by2Ttest text html latex example chm
deGenes2by2Wilcox text html latex example chm
deGenesANOVA text html latex example chm
designANOVA text html latex example chm
dim-methods text html latex example chm
gastro text html latex chm
getLabels text html latex example chm
heatmapsM text html latex chm
hierM text html latex example chm
hierMde text html latex example chm
image-methods text html latex example chm
kmeansM text html latex example chm
kmeansMde text html latex example chm
loadData text html latex example chm
maiges-class text html latex chm
maigesANOVA-class text html latex chm
maigesActMod-class text html latex chm
maigesActNet-class text html latex chm
maigesClass-class text html latex chm
maigesDE-class text html latex chm
maigesDEcluster-class text html latex chm
maigesPreRaw-class text html latex chm
maigesRaw-class text html latex chm
maigesRelNetB-class text html latex chm
maigesRelNetM-class text html latex chm
normLoc text html latex example chm
normOLIN text html latex example chm
normRepLoess text html latex example chm
normScaleLimma text html latex example chm
normScaleMarray text html latex example chm
plot-methods text html latex example chm
plotGenePair text html latex example chm
print-methods text html latex example chm
relNet2TGF text html latex example chm
relNetworkB text html latex example chm
relNetworkM text html latex example chm
robustCorr text html latex example chm
selSpots text html latex example chm
show-methods text html latex example chm
somM text html latex example chm
somMde text html latex example chm
summarizeReplicates text html latex example chm
summary-methods text html latex example chm
tableClass text html latex example chm
tablesDE text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "es\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\maigesPack.Rcheck\00_pkg_src\maigesPack\chm\maigesPack.chm
HHC4016: Warning: Cannot open "es\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (maigesPack)