made4 1.12.1
Aedin Culhane
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/made4 | | Last Changed Rev: 27740 / Revision: 30966 | | Last Changed Date: 2007-10-03 18:19:17 -0700 (Wed, 03 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/made4.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'made4/DESCRIPTION' ... OK
* this is package 'made4' version '1.12.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'made4' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getdata: no visible binding for global variable 'intensities'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'bga':
plot.bga
S3 methods shown with full name in documentation object 'cia':
plot.cia
S3 methods shown with full name in documentation object 'comparelists':
print.comparelists
S3 methods shown with full name in documentation object 'ord':
plot.ord
S3 methods shown with full name in documentation object 'suppl':
plot.suppl
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating made4-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating made4-manual.tex ... OK
* checking made4-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/made4.Rcheck
---------- Making package made4 ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
Note: unmatched right brace in 'cia' on or after line 102
Note: unmatched right brace in 'cia.Rd' on or after line 102
Note: unmatched right brace in 'genes' on or after line 40
Note: unmatched right brace in 'genes.Rd' on or after line 40
Note: unmatched right brace in 'jmol3D' on or after line 42
Note: unmatched right brace in 'jmol3D.Rd' on or after line 42
Note: unmatched right brace in 'plotgenes' on or after line 48
Note: unmatched right brace in 'plotgenes.Rd' on or after line 48
>>> Building/Updating help pages for package 'made4'
Formats: text html latex example chm
NCI60 text html latex example chm
array2ade4 text html latex example chm
bet.coinertia text html latex example chm
between.graph text html latex example chm
bga text html latex example chm
bga.jackknife text html latex example chm
bga.suppl text html latex example chm
checkfac text html latex example chm
chime3D text html latex example chm
cia text html latex example chm
commonMap text html latex example chm
comparelists text html latex example chm
do3d text html latex example chm
dudi.rwcoa text html latex example chm
forrwcoa text html latex example chm
genes text html latex example chm
genes1d text html latex example chm
getcol text html latex example chm
getdata text html latex example chm
graph1D text html latex example chm
heatplot text html latex example chm
html3D text html latex example chm
jmol3D text html latex example chm
khan text html latex example chm
ord text html latex example chm
overview text html latex example chm
plotarrays text html latex example chm
plotgenes text html latex example chm
pretty.dend text html latex example chm
randomiser text html latex example chm
s.var text html latex example chm
sumstats text html latex example chm
suppl text html latex example chm
topgenes text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\made4.Rcheck\00_pkg_src\made4\chm\made4.chm
HHC4016: Warning: Cannot open "gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package made4 for lazy loading
Loading required package: ade4
Attaching package: 'ade4'
The following object(s) are masked from package:base :
within
adding MD5 sums
* DONE (made4)