Package: keggorth

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check keggorth_1.0.0.tar.gz

StartedAt: 2008-04-09 15:56:12 -0700 (Wed, 09 Apr 2008)

EndedAt: 2008-04-09 15:56:58 -0700 (Wed, 09 Apr 2008)

EllapsedTime: 46.5 seconds

RetCode: 0

Status: OK

CheckDir: keggorth.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/keggorth.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'keggorth/DESCRIPTION' ... OK
* this is package 'keggorth' version '1.0.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'keggorth' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getKOprobes: no visible binding for global variable 'KOgraph'
getKOtags: no visible binding for global variable 'KOgraph'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating keggorth-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating keggorth-manual.tex ... OK
* checking keggorth-manual.tex ... OK

* Installing *source* package 'keggorth' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'keggorth'
     Formats: text html latex example 
  getKOprobes                       text    html    latex   example
  indRender                         text    html    latex   example
  keggDF2graph                      text    html    latex   example
** building package indices ...
* DONE (keggorth)