iSNetwork 1.8.0
Elizabeth Whalen
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/iSNetwork | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | [ WARNINGS ] | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| lemming | Windows Server 2003 (32-bit) / x64 | N O T S U P P O R T E D |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/iSNetwork.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'iSNetwork/DESCRIPTION' ... OK
* this is package 'iSNetwork' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'iSNetwork' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
(R:25396): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... WARNING
(R:25411): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... WARNING
(R:25417): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
In R, the argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... WARNING
(R:25426): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
See the chapter 'System and foreign language interfaces' of the 'Writing R
Extensions' manual.
* checking R code for possible problems ... NOTE
(R:25645): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
createChildModelView: no visible global function definition for
'gtkComboGetList'
createChrLocGSEGUI : <anonymous>: no visible global function definition
for 'gtkCListGetRows'
createChrLocGSEGUI : <anonymous>: no visible global function definition
for 'gtkCListGetFocusRow'
createChrLocGSEGUI: no visible global function definition for
'gtkComboGetList'
createColorBrowser: no visible global function definition for
'gtkColorSelectionDialogGetOkButton'
createColorBrowser: no visible global function definition for
'gtkColorSelectionDialogGetCancelButton'
createColorBrowser: no visible global function definition for
'gtkColorSelectionDialogGetHelpButton'
createColorBrowser: no visible global function definition for
'gtkColorSelectionDialogGetColorsel'
createGoGraphGUI : <anonymous>: no visible global function definition
for 'gtkCListGetRows'
createGoGraphGUI : <anonymous>: no visible global function definition
for 'gtkCListGetFocusRow'
createGoGraphGUI: no visible global function definition for
'gtkComboGetList'
createKEGGGSEGUI : <anonymous>: no visible global function definition
for 'gtkCListGetRows'
createKEGGGSEGUI : <anonymous>: no visible global function definition
for 'gtkCListGetFocusRow'
createKEGGGSEGUI: no visible global function definition for
'gtkComboGetList'
createKeyPressEvent : <anonymous>: no visible global function
definition for 'gdkEventKeyGetString'
createKeyPressEvent : <anonymous>: no visible global function
definition for 'gdkEventKeyGetState'
createKeyPressEvent : <anonymous>: no visible global function
definition for 'gdkEventKeyGetKeyval'
createMDSCluster: no visible global function definition for
'gtkComboGetList'
createSubsetGUI: no visible global function definition for
'gtkComboGetList'
setLoadModelView: no visible global function definition for
'gtkComboGetList'
setLoadModelView : <anonymous>: no visible global function definition
for 'gtkCListGetFocusRow'
showHiddenView : <anonymous>: no visible global function definition for
'gtkCListGetRows'
showHiddenView : <anonymous>: no visible global function definition for
'gtkCListGetFocusRow'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
(R:25722): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... WARNING
(R:26016): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
(R:26283): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
(R:26332): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
* checking Rd \usage sections ... NOTE
(R:26344): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* creating iSNetwork-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... WARNING
(R:26573): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
--- running texi2dvi on vignettes
* creating iSNetwork-manual.tex ... OK
* checking iSNetwork-manual.tex ... OK
WARNING: There were 7 warnings, see
/home/biocbuild/bbs-2.1-bioc/meat/iSNetwork.Rcheck/00check.log
for details
* Installing *source* package 'iSNetwork' ...
** R
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: Rgraphviz
Loading required package: RGtk
(R:24951): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
Loading required package: gtkDevice
Loading required package: BioMVCClass
Loading required package: MVCClass
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Attaching package: 'annotate'
The following object(s) are masked from package:Rgraphviz :
toFile
** help
>>> Building/Updating help pages for package 'iSNetwork'
Formats: text html latex example
addCBFunction text html latex example
addMenuItem text html latex example
addNewChildMethod text html latex example
addToKeyVals text html latex example
clickEvent-methods text html latex
createChrLocGSE text html latex example
createControlWindow text html latex example
createGoGraph text html latex example
createGraphPlot text html latex example
createHeatmap text html latex example
createKEGGGSE text html latex example
createModelGraph text html latex example
createQQplot text html latex example
createSPlot text html latex example
createSpreadsheet text html latex example
createSubset text html latex example
deleteMVC text html latex example
getActiveMVC text html latex example
getColor text html latex example
getData text html latex example
getHiddenValues text html latex example
getKeyVals text html latex example
getMVCFromWinNum text html latex example
getMVCList text html latex example
getMethodsToCreateChild text html latex example
getModelNames text html latex example
getModelVar text html latex example
getNodeAttr text html latex example
getTooltips text html latex example
handleMessage-methods text html latex
heatmapNI text html latex example
identifyView-methods text html latex
initialize-methods text html latex
loadData text html latex example
loadModel text html latex example
loadModelVar text html latex example
motionEvent-methods text html latex
performMDS text html latex example
plotModelGraph text html latex example
provideInfo-methods text html latex
quitiSNetwork text html latex example
removeKeyVals text html latex example
resetWinSize text html latex example
setActiveMVC text html latex example
setCallFunc text html latex example
setChipType text html latex example
setColor text html latex example
setModelName text html latex example
setToggleX text html latex example
setTooltips text html latex example
showHiddenValues text html latex example
updateModel-methods text html latex
updateView-methods text html latex
** building package indices ...
* DONE (iSNetwork)