Package: diffGeneAnalysis

Version: 1.20.0

Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check diffGeneAnalysis_1.20.0.tar.gz

StartedAt: 2008-04-09 17:15:08 -0700 (Wed, 09 Apr 2008)

EndedAt: 2008-04-09 17:15:42 -0700 (Wed, 09 Apr 2008)

EllapsedTime: 34.0 seconds

RetCode: 0

Status: OK

CheckDir: diffGeneAnalysis.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.1-bioc/meat/diffGeneAnalysis.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'diffGeneAnalysis/DESCRIPTION' ... OK
* this is package 'diffGeneAnalysis' version '1.20.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'diffGeneAnalysis' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
curveFit: no visible binding for global variable 'nmean'
curveFit: no visible binding for global variable 'nsd'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating diffGeneAnalysis-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating diffGeneAnalysis-manual.tex ... OK
* checking diffGeneAnalysis-manual.tex ... OK

* Installing *source* package 'diffGeneAnalysis' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'diffGeneAnalysis'
     Formats: text html latex example 
  assocAnalysis                     text    html    latex   example
  biasAdjust                        text    html    latex   example
  curveFit                          text    html    latex   example
  dataTrim                          text    html    latex   example
  normalize                         text    html    latex   example
  rawdata                           text    html    latex   example
  refGroup                          text    html    latex   example
** building package indices ...
* DONE (diffGeneAnalysis)