bgafun 1.1.0
Iain Wallace
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/bgafun | | Last Changed Rev: 30325 / Revision: 30966 | | Last Changed Date: 2008-03-02 14:30:55 -0800 (Sun, 02 Mar 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | [ OK ] |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/bgafun.buildbin-libdir
Using auto-selected zip options 'bgafun-ZIPDATA=zip bgafun-HELP=ziponly'
---------- Making package bgafun ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
installing man source files
installing indices
zipping data
installing help
Note: unmatched right brace in 'add_pseudo_counts' on or after line 9
Note: unmatched right brace in 'add_pseudo_counts.Rd' on or after line 9
Note: unmatched right brace in 'run_between_pca' on or after line 8
Note: unmatched right brace in 'run_between_pca.Rd' on or after line 8
>>> Building/Updating help pages for package 'bgafun'
Formats: text html latex example chm
Calculate_Row_Weights text html latex example chm
Henikoff_weights text html latex chm
LDH text html latex chm
LDH.aap text html latex chm
LDH.aap.ave text html latex chm
LDH.amino text html latex chm
LDH.amino.gapless text html latex chm
LDH.amino.pseudo text html latex chm
LDH.groups text html latex chm
Weight_Amino text html latex chm
add_pseudo_counts text html latex example chm
amino_counts text html latex chm
average_cols_aap text html latex example chm
bgafun text html latex example chm
calculate_pseudo text html latex chm
convertAAP.package text html latex chm
convert_aln_AAP text html latex example chm
convert_aln_amino text html latex example chm
convert_amino.package text html latex chm
convert_seq_AAP text html latex chm
convert_seq_amino text html latex chm
create_colnames_AAP text html latex chm
create_colnames_amino text html latex chm
create_probab text html latex chm
create_profile text html latex chm
create_profile_strings text html latex example chm
pseudo_counts text html latex chm
remove_gaps text html latex chm
remove_gaps_groups text html latex example chm
run_between_pca text html latex example chm
sum_20_aln text html latex chm
sum_20_cols text html latex chm
sum_aln text html latex chm
top_residues_2_groups text html latex example chm
zipping help files
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open ";c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.5224\bgafun\chm\bgafun.chm
HHC4016: Warning: Cannot open ";c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
packaged installation of package 'bgafun' as bgafun_1.1.0.zip
* DONE (bgafun)