affycomp 1.14.0
Rafael A. Irizarry
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/affycomp | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/affycomp.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'affycomp/DESCRIPTION' ... OK
* this is package 'affycomp' version '1.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affycomp' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
affycomp: no visible binding for global variable 'mas5.assessment'
read.dilution: no visible binding for global variable
'dilution.phenodata'
read.spikein: no visible binding for global variable
'spikein.phenodata'
read.spikein: no visible binding for global variable
'hgu133a.spikein.phenodata'
remove.hgu133a.xhyb: no visible binding for global variable
'hgu133a.spikein.xhyb'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating affycomp-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating affycomp-manual.tex ... OK
* checking affycomp-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/affycomp.Rcheck
---------- Making package affycomp ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'affycomp'
Formats: text html latex example chm
SD text html latex example chm
affycomp.compfigs.auxiliary text html latex example chm
affycomp.figures.auxiliary text html latex example chm
affycomp.table text html latex example chm
affycompPlot text html latex example chm
assessAll text html latex chm
assessDilution text html latex chm
assessSD text html latex chm
assessSpikeIn text html latex chm
assessSpikeIn2 text html latex chm
dilution.phenodata text html latex chm
exprset.log text html latex chm
hgu133a.spikein.phenodata text html latex chm
lw.sd.assessment text html latex chm
mas5.assessment text html latex chm
readin text html latex chm
remove.hgu133a.xhyb text html latex chm
rma.assessment text html latex chm
rma.sd.assessment text html latex chm
spikein.phenodata text html latex chm
xhyb text html latex chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\affycomp.Rcheck\00_pkg_src\affycomp\chm\affycomp.chm
HHC4016: Warning: Cannot open "Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package affycomp for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
adding MD5 sums
* DONE (affycomp)