ScISI 1.10.0
Tony Chiang
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/ScISI | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
| lemming | Windows Server 2003 (32-bit) / x64 | ERROR | skipped | skipped |
| pitt | Mac OS X Tiger (10.4.11) / i386 | ERROR | skipped | skipped |
* checking for file 'ScISI/DESCRIPTION' ... OK
* preparing 'ScISI':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst598881546
---------- Making package ScISI ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'ScISI'
Formats: text html latex example chm
Desc-methods text html latex chm
ID-methods text html latex chm
JaccardCoef text html latex example chm
ScISI text html latex example chm
ScISI2html text html latex example chm
arp23 text html latex example chm
arp23G text html latex example chm
arp23Orf text html latex example chm
arp23Y2HG text html latex example chm
calcGraphStats text html latex example chm
cfia text html latex example chm
cfiaOrf text html latex example chm
checkComplex text html latex example chm
checkSGN text html latex example chm
compBijection text html latex example chm
compareComplex text html latex example chm
createGODataFrame text html latex example chm
createGOMatrix text html latex example chm
createMipsDataFrame text html latex example chm
createMipsMatrix text html latex example chm
createYeastDataObj text html latex example chm
dataS text html latex example chm
eAt text html latex example chm
eAt2 text html latex example chm
edgeProp text html latex example chm
egEBI16112 text html latex example chm
expStats text html latex example chm
findSubComp text html latex example chm
gavin2mergeMG text html latex example chm
getAPMSData text html latex example chm
getGOInfo text html latex example chm
getLocOrfs text html latex example chm
getMipsInfo text html latex example chm
getURL-methods text html latex chm
graphSumStats text html latex example chm
ho2mergeMGG text html latex example chm
krogan2mergeMGGH text html latex example chm
locScISI text html latex example chm
mapping2SysG text html latex example chm
mappingsG text html latex example chm
maximizeSimilarity text html latex example chm
meanDeg text html latex example chm
mergeBGMat text html latex example chm
mips2go text html latex example chm
nAt text html latex chm
nAtMap text html latex example chm
nonGenes text html latex example chm
nucComp text html latex example chm
recCompSize text html latex example chm
redundantM text html latex example chm
rmByEvi text html latex example chm
runAlignment text html latex example chm
runCompareComplex text html latex example chm
subCompM text html latex example chm
sumStats text html latex example chm
unWantedComp text html latex example chm
unwanted text html latex example chm
xtraGO text html latex example chm
xtraGONodes text html latex example chm
yeastData-class text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.1-bioc\meat\ScISI\chm\ScISI.chm
Compile time: 0 minutes, 1 second
61 Topics
148 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.1-bioc\meat\ScISI\chm\ScISI.chm, 71,796 bytes
Compression decreased file by 87,603 bytes.
preparing package ScISI for lazy loading
Loading required package: apComplex
Loading required package: graph
Loading required package: RBGL
Loading required package: GO
Loading required package: GOstats
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: RSQLite
Attaching package: 'GO.db'
The following object(s) are masked from package:GO :
GOBPANCESTOR,
GOBPCHILDREN,
GOBPOFFSPRING,
GOBPPARENTS,
GOCCANCESTOR,
GOCCCHILDREN,
GOCCOFFSPRING,
GOCCPARENTS,
GOMAPCOUNTS,
GOMFANCESTOR,
GOMFCHILDREN,
GOMFOFFSPRING,
GOMFPARENTS,
GOOBSOLETE,
GOSYNONYM,
GOTERM
Loading required package: annotate
Loading required package: xtable
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: Rgraphviz
Attaching package: 'Rgraphviz'
The following object(s) are masked from package:annotate :
toFile
Loading required package: YEAST
Loading required package: Rintact
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
Loading required package: ppiStats
Loading required package: ppiData
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from package:Rgraphviz :
head,
tail
The following object(s) are masked from package:xtable :
label,
label<-
The following object(s) are masked from package:AnnotationDbi :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
adding MD5 sums
* DONE (ScISI)
* creating vignettes ... ERROR
Loading required package: apComplex
Loading required package: graph
Loading required package: RBGL
Loading required package: GO
Loading required package: GOstats
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: RSQLite
Attaching package: 'GO.db'
The following object(s) are masked from package:GO :
GOBPANCESTOR,
GOBPCHILDREN,
GOBPOFFSPRING,
GOBPPARENTS,
GOCCANCESTOR,
GOCCCHILDREN,
GOCCOFFSPRING,
GOCCPARENTS,
GOMAPCOUNTS,
GOMFANCESTOR,
GOMFCHILDREN,
GOMFOFFSPRING,
GOMFPARENTS,
GOOBSOLETE,
GOSYNONYM,
GOTERM
Loading required package: annotate
Loading required package: xtable
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: Rgraphviz
Attaching package: 'Rgraphviz'
The following object(s) are masked from package:annotate :
toFile
Loading required package: YEAST
Loading required package: Rintact
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
Loading required package: ppiStats
Loading required package: ppiData
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from package:Rgraphviz :
head,
tail
The following object(s) are masked from package:xtable :
label,
label<-
The following object(s) are masked from package:AnnotationDbi :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
Error: processing vignette 'vignette.Rnw' failed with diagnostics:
argument is of length zero
In addition: Warning messages:
1: In data(y2hGW) : data set 'y2hGW' not found
2: In toGrep[[j]]$x = gtcc : Coercing LHS to a list
3: In toGrep[[j]]$x = desc : Coercing LHS to a list
Execution halted