SNPchip 1.2.1
Robert Scharpf
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/SNPchip | | Last Changed Rev: 27724 / Revision: 30966 | | Last Changed Date: 2007-10-03 06:02:47 -0700 (Wed, 03 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for file 'SNPchip/DESCRIPTION' ... OK
* preparing 'SNPchip':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst502068429
---------- Making package SNPchip ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package SNPchip for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: oligoClasses
Creating a new generic function for "summary" in "SNPchip"
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'SNPchip'
Formats: text html latex example chm
DEPRECATED-classes text html latex chm
ParESet-class text html latex example chm
ParSnpCallSet-class text html latex example chm
ParSnpCopyNumberSet-class text html latex example chm
ParSnpSet-class text html latex example chm
addFeatureData-method text html latex chm
allPlots-methods text html latex chm
alleleA text html latex example chm
alleleB text html latex example chm
calculateCopyNumber text html latex chm
centromere text html latex example chm
chromosome text html latex chm
chromosomeAnnotation text html latex example chm
chromosomeSize text html latex example chm
coerce-methods text html latex chm
cytoband text html latex example chm
dbSnpId text html latex example chm
enzyme text html latex example chm
fragmentLength text html latex example chm
getPar-methods text html latex chm
getSnpAnnotation text html latex example chm
hapmap text html latex example chm
initialize-methods text html latex chm
plotCytoband text html latex example chm
plotSnp text html latex example chm
position text html latex chm
sample.snpset text html latex example chm
selectSomeIndex text html latex example chm
show-methods text html latex chm
showSummary text html latex example chm
smoothSnp text html latex example chm
snpPar text html latex example chm
summary-methods text html latex chm
unsplitSnpSet text html latex example chm
updateObject-methods text html latex chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "fx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\SNPchip\chm\SNPchip.chm
HHC4016: Warning: Cannot open "fx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (SNPchip)
* creating vignettes ... OK
* removing junk files
* excluding invalid files from 'SNPchip'
Subdirectory 'man' contains invalid file names:
.calculateYlim.Rd
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'SNPchip_1.2.1.tar.gz'