Rgraphviz 1.16.0
Li Long
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/Rgraphviz | | Last Changed Rev: 27857 / Revision: 30966 | | Last Changed Date: 2007-10-08 16:33:43 -0700 (Mon, 08 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | [ OK ] | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for file 'Rgraphviz/DESCRIPTION' ... OK
* preparing 'Rgraphviz':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'Rgraphviz' ...
configure: No --with-graphviz option was specified. Trying to find graphviz using other methods.
checking for pkg-config... /usr/bin/pkg-config
configure: Found graphviz 2.14.1
configure: We have inferred the following flags for graphviz
configure: ..PKG_CPPFLAGS=-I/usr/include/graphviz
configure: ..PKG_LIBS=-lgvc
checking for whether compiler has bool... checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -I/usr/local/include -fpic -g -O2 -Wall -c agopen.c -o agopen.o
In file included from /usr/include/graphviz/gvc.h:20,
from common.h:31,
from agopen.c:1:
/usr/include/graphviz/types.h:27:1: warning: "TRUE" redefined
In file included from common.h:5,
from agopen.c:1:
/home/biocbuild/bbs-2.1-bioc/R/include/Rdefines.h:149:1: warning: this is the location of the previous definition
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -I/usr/local/include -fpic -g -O2 -Wall -c agread.c -o agread.o
In file included from /usr/include/graphviz/gvc.h:20,
from common.h:31,
from agread.c:1:
/usr/include/graphviz/types.h:27:1: warning: "TRUE" redefined
In file included from common.h:5,
from agread.c:1:
/home/biocbuild/bbs-2.1-bioc/R/include/Rdefines.h:149:1: warning: this is the location of the previous definition
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -I/usr/local/include -fpic -g -O2 -Wall -c agwrite.c -o agwrite.o
In file included from /usr/include/graphviz/gvc.h:20,
from common.h:31,
from agwrite.c:1:
/usr/include/graphviz/types.h:27:1: warning: "TRUE" redefined
In file included from common.h:5,
from agwrite.c:1:
/home/biocbuild/bbs-2.1-bioc/R/include/Rdefines.h:149:1: warning: this is the location of the previous definition
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -I/usr/local/include -fpic -g -O2 -Wall -c bezier.c -o bezier.o
In file included from /usr/include/graphviz/gvc.h:20,
from common.h:31,
from bezier.c:1:
/usr/include/graphviz/types.h:27:1: warning: "TRUE" redefined
In file included from common.h:5,
from bezier.c:1:
/home/biocbuild/bbs-2.1-bioc/R/include/Rdefines.h:149:1: warning: this is the location of the previous definition
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -I/usr/local/include -fpic -g -O2 -Wall -c buildEdgeList.c -o buildEdgeList.o
In file included from /usr/include/graphviz/gvc.h:20,
from common.h:31,
from buildEdgeList.c:1:
/usr/include/graphviz/types.h:27:1: warning: "TRUE" redefined
In file included from common.h:5,
from buildEdgeList.c:1:
/home/biocbuild/bbs-2.1-bioc/R/include/Rdefines.h:149:1: warning: this is the location of the previous definition
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -I/usr/local/include -fpic -g -O2 -Wall -c buildNodeList.c -o buildNodeList.o
In file included from /usr/include/graphviz/gvc.h:20,
from common.h:31,
from buildNodeList.c:1:
/usr/include/graphviz/types.h:27:1: warning: "TRUE" redefined
In file included from common.h:5,
from buildNodeList.c:1:
/home/biocbuild/bbs-2.1-bioc/R/include/Rdefines.h:149:1: warning: this is the location of the previous definition
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -I/usr/local/include -fpic -g -O2 -Wall -c doLayout.c -o doLayout.o
In file included from /usr/include/graphviz/gvc.h:20,
from common.h:31,
from doLayout.c:1:
/usr/include/graphviz/types.h:27:1: warning: "TRUE" redefined
In file included from common.h:5,
from doLayout.c:1:
/home/biocbuild/bbs-2.1-bioc/R/include/Rdefines.h:149:1: warning: this is the location of the previous definition
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -I/usr/local/include -fpic -g -O2 -Wall -c graphvizVersion.c -o graphvizVersion.o
In file included from /usr/include/graphviz/gvc.h:20,
from common.h:31,
from graphvizVersion.c:1:
/usr/include/graphviz/types.h:27:1: warning: "TRUE" redefined
In file included from common.h:5,
from graphvizVersion.c:1:
/home/biocbuild/bbs-2.1-bioc/R/include/Rdefines.h:149:1: warning: this is the location of the previous definition
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -I/usr/local/include -fpic -g -O2 -Wall -c init.c -o init.o
In file included from /usr/include/graphviz/gvc.h:20,
from common.h:31,
from init.c:1:
/usr/include/graphviz/types.h:27:1: warning: "TRUE" redefined
In file included from common.h:5,
from init.c:1:
/home/biocbuild/bbs-2.1-bioc/R/include/Rdefines.h:149:1: warning: this is the location of the previous definition
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -I/usr/local/include -fpic -g -O2 -Wall -c LL_funcs.c -o LL_funcs.o
In file included from /usr/include/graphviz/gvc.h:20,
from common.h:31,
from LL_funcs.c:1:
/usr/include/graphviz/types.h:27:1: warning: "TRUE" redefined
In file included from common.h:5,
from LL_funcs.c:1:
/home/biocbuild/bbs-2.1-bioc/R/include/Rdefines.h:149:1: warning: this is the location of the previous definition
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -I/usr/local/include -fpic -g -O2 -Wall -c Rgraphviz.c -o Rgraphviz.o
In file included from /usr/include/graphviz/gvc.h:20,
from common.h:31,
from Rgraphviz.c:1:
/usr/include/graphviz/types.h:27:1: warning: "TRUE" redefined
In file included from common.h:5,
from Rgraphviz.c:1:
/home/biocbuild/bbs-2.1-bioc/R/include/Rdefines.h:149:1: warning: this is the location of the previous definition
Rgraphviz.c:18: warning: C99 inline functions are not supported; using GNU89
Rgraphviz.c:18: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=14 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -I/usr/local/include -fpic -g -O2 -Wall -c RgraphvizInit.c -o RgraphvizInit.o
In file included from /usr/include/graphviz/gvc.h:20,
from common.h:31,
from RgraphvizInit.c:1:
/usr/include/graphviz/types.h:27:1: warning: "TRUE" redefined
In file included from common.h:5,
from RgraphvizInit.c:1:
/home/biocbuild/bbs-2.1-bioc/R/include/Rdefines.h:149:1: warning: this is the location of the previous definition
gcc -std=gnu99 -shared -L/usr/local/lib -o Rgraphviz.so agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o LL_funcs.o Rgraphviz.o RgraphvizInit.o -lgvc -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
Loading required package: graph
Creating a new generic function for "head" in "Rgraphviz"
Creating a new generic function for "tail" in "Rgraphviz"
Creating a new generic function for "lines" in "Rgraphviz"
Creating a new generic function for "plot" in "Rgraphviz"
** help
>>> Building/Updating help pages for package 'Rgraphviz'
Formats: text html latex example
AgEdge-class text html latex example
AgNode-class text html latex example
AgTextLabel-class text html latex example
BezierCurve-class text html latex example
GraphvizAttributes text html latex example
GraphvizLayouts text html latex example
Ragraph-class text html latex example
agopen text html latex example
agopenSimple text html latex example
agwrite text html latex example
boundingBox-class text html latex example
buildNodeList text html latex example
clusterData-methods text html latex example
getDefaultAttrs text html latex example
graphData-methods text html latex
graphDataDefaults-methods text html latex
graphvizVersion text html latex example
layoutGraph text html latex example
makeNodeAttrs text html latex example
pEdge-class text html latex example
pNode-class text html latex example
pieGlyph text html latex example
plot-methods text html latex example
removedEdges text html latex example
toDot-methods text html latex example
toFile text html latex example
xyPoint-class text html latex example
** building package indices ...
* DONE (Rgraphviz)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Rgraphviz_1.16.0.tar.gz'