MANOR 1.10.0
Pierre Neuvial
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/MANOR | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for file 'MANOR/DESCRIPTION' ... OK
* preparing 'MANOR':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst377686087
---------- Making package MANOR ------------
adding build stamp to DESCRIPTION
making DLL ...
making Rnem_arg.d from Rnem_arg.c
making Rnem_exe.d from Rnem_exe.c
making exememo.d from exememo.c
making lib_io.d from lib_io.c
making nem_alg.d from nem_alg.c
making nem_hlp.d from nem_hlp.c
making nem_mod.d from nem_mod.c
making nem_nei.d from nem_nei.c
making nem_rnd.d from nem_rnd.c
making nem_ver.d from nem_ver.c
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c Rnem_arg.c -o Rnem_arg.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c Rnem_exe.c -o Rnem_exe.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c exememo.c -o exememo.o
exememo.c: In function 'GenAlloc':
exememo.c:39: warning: format '%ld' expects type 'long int', but argument 5 has type 'size_t'
exememo.c:39: warning: format '%ld' expects type 'long int', but argument 6 has type 'size_t'
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c lib_io.c -o lib_io.o
lib_io.c: In function 'CountLinesColumns':
lib_io.c:354: warning: 'maxcols' may be used uninitialized in this function
lib_io.c:354: warning: 'mincols' may be used uninitialized in this function
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c nem_alg.c -o nem_alg.o
nem_alg.c: In function 'ClassifyByNemOneBeta':
nem_alg.c:1626: warning: 'bestCritS.Errcur.Errorrate' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.Errcur.Errorrate' was declared here
nem_alg.c:1626: warning: 'bestCritS.Errcur.Ibestpermut' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.Errcur.Ibestpermut' was declared here
nem_alg.c:1626: warning: 'bestCritS.Errcur.Loclas_N_Kc' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.Errcur.Loclas_N_Kc' was declared here
nem_alg.c:1626: warning: 'bestCritS.Errcur.Agree_Km_Km' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.Errcur.Agree_Km_Km' was declared here
nem_alg.c:1626: warning: 'bestCritS.Errinfo.Perm_Kmfac_Km' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.Errinfo.Perm_Kmfac_Km' was declared here
nem_alg.c:1626: warning: 'bestCritS.Errinfo.Refclas_N_Kr' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.Errinfo.Refclas_N_Kr' was declared here
nem_alg.c:1626: warning: 'bestCritS.Errinfo.TieRule' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.Errinfo.TieRule' was declared here
nem_alg.c:1626: warning: 'bestCritS.Errinfo.Kmfac' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.Errinfo.Kmfac' was declared here
nem_alg.c:1626: warning: 'bestCritS.Errinfo.Km' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.Errinfo.Km' was declared here
nem_alg.c:1626: warning: 'bestCritS.Errinfo.Kr' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.Errinfo.Kr' was declared here
nem_alg.c:1626: warning: 'bestCritS.Errinfo.Kc' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.Errinfo.Kc' was declared here
nem_alg.c:1626: warning: 'bestCritS.Z' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.Z' was declared here
nem_alg.c:1626: warning: 'bestCritS.G' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.G' was declared here
nem_alg.c:1626: warning: 'bestCritS.U' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.U' was declared here
nem_alg.c:1626: warning: 'bestCritS.M' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.M' was declared here
nem_alg.c:1626: warning: 'bestCritS.D' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.D' was declared here
nem_alg.c:1626: warning: 'bestCritS.L' may be used uninitialized in this function
nem_alg.c:1626: note: 'bestCritS.L' was declared here
nem_alg.c:1631: warning: 'bestbeta' may be used uninitialized in this function
nem_alg.c:1631: note: 'bestbeta' was declared here
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c nem_hlp.c -o nem_hlp.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c nem_mod.c -o nem_mod.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c nem_nei.c -o nem_nei.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c nem_rnd.c -o nem_rnd.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c nem_ver.c -o nem_ver.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i MANOR_res.rc -o MANOR_res.o
gcc-sjlj -std=gnu99 -shared -s -o MANOR.dll MANOR.def Rnem_arg.o Rnem_exe.o exememo.o lib_io.o nem_alg.o nem_hlp.o nem_mod.o nem_nei.o nem_rnd.o nem_ver.o MANOR_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'MANOR'
Formats: text html latex example chm
MANOR-internal text html latex chm
arrayTrend text html latex example chm
detectSB text html latex example chm
flag text html latex example chm
flag.arrayCGH text html latex example chm
flag.summary text html latex example chm
flags text html latex example chm
genome.plot text html latex example chm
html.report text html latex example chm
import text html latex example chm
nem text html latex example chm
norm.arrayCGH text html latex example chm
qscore text html latex example chm
qscore.arrayCGH text html latex example chm
qscore.summary text html latex example chm
qscores text html latex example chm
report.plot text html latex example chm
sort.arrayCGH text html latex example chm
spatial text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\MANOR\chm\MANOR.chm
HHC4016: Warning: Cannot open "8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package MANOR for lazy loading
Loading required package: GLAD
Loading required package: aws
Loading required package: tcltk
Loading Tcl/Tk interface ... done
adding MD5 sums
* DONE (MANOR)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'MANOR_1.10.0.tar.gz'