Icens 1.10.0
Biocore Team c/o BioC user list
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/Icens | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/Icens.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'Icens/DESCRIPTION' ... OK
* this is package 'Icens' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Icens' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
VEMICMmac: no visible binding for global variable 'EMstep'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.icsurv':
plot.icsurv
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating Icens-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/e/biocbld/bbs-2.1-bioc/meat/Icens.Rcheck/tests'
Running 'testbv.R'
Comparing 'testbv.Rout' to 'testbv.Rout.save' ...117c117
< [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 -7.663560e-17
---
> [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 -2.480201e-16
OK
make[1]: Leaving directory `/cygdrive/e/biocbld/bbs-2.1-bioc/meat/Icens.Rcheck/tests'
OK
* creating Icens-manual.tex ... OK
* checking Icens-manual.tex ... OK
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/Icens.Rcheck
---------- Making package Icens ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'Icens'
Formats: text html latex example chm
BVcliques text html latex example chm
BVclmat text html latex example chm
BVsupport text html latex example chm
Bisect text html latex chm
EM text html latex example chm
EMICM text html latex example chm
ISDM text html latex example chm
Icens-internal text html latex chm
MLEintvl text html latex example chm
Maclist text html latex example chm
Macmat text html latex example chm
PGM text html latex example chm
PMGA text html latex chm
Plotboxes text html latex example chm
VEM text html latex example chm
cmv text html latex example chm
cosmesis text html latex example chm
hiv text html latex example chm
icsurv text html latex chm
plot.icsurv text html latex example chm
pruitt text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.1-bioc\meat\Icens.Rcheck\00_pkg_src\Icens\chm\Icens.chm
Compile time: 0 minutes, 0 seconds
22 Topics
94 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.1-bioc\meat\Icens.Rcheck\00_pkg_src\Icens\chm\Icens.chm, 39,590 bytes
Compression decreased file by 28,613 bytes.
preparing package Icens for lazy loading
Loading required package: survival
Loading required package: splines
adding MD5 sums
* DONE (Icens)