HEM 1.10.0
HyungJun Cho
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/HEM | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/HEM.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'HEM/DESCRIPTION' ... OK
* this is package 'HEM' version '1.10.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HEM' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating HEM-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating HEM-manual.tex ... OK
* checking HEM-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/HEM.Rcheck
---------- Making package HEM ------------
adding build stamp to DESCRIPTION
making DLL ...
making hem.d from hem.c
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c hem.c -o hem.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i HEM_res.rc -o HEM_res.o
gcc-sjlj -std=gnu99 -shared -s -o HEM.dll HEM.def hem.o HEM_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'HEM'
Formats: text html latex example chm
am.tran text html latex chm
am.tran.half text html latex chm
base.ASE.Olig text html latex chm
base.PSE.Olig text html latex chm
base.error.Olig text html latex chm
base.error.Olig.quanOnly text html latex chm
boot.base.ASE.Olig text html latex chm
boot.base.PSE.Olig text html latex chm
boot.base.error.Olig text html latex chm
fixbound.predict.smooth.spline text html latex chm
hem text html latex example chm
hem.eb.prior text html latex example chm
hem.fdr text html latex example chm
hem.null.no text html latex chm
hem.null.one text html latex chm
hem.null.two text html latex chm
hem.preproc text html latex example chm
mubcp text html latex chm
nonpar.error.Olig text html latex chm
nonpar.no.error.Olig text html latex chm
nonpar.rep.error.Olig text html latex chm
par.error.Olig text html latex chm
par.no.error.Olig text html latex chm
par.rep.error.Olig text html latex chm
pbrain text html latex chm
permut text html latex chm
quant.norm text html latex chm
quant.normal text html latex chm
quant.normal2 text html latex chm
quant.normalize text html latex chm
remove.sig.genes text html latex chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\HEM.Rcheck\00_pkg_src\HEM\chm\HEM.chm
HHC4016: Warning: Cannot open "51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package HEM for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
adding MD5 sums
* DONE (HEM)