DNAcopy 1.12.0
Venkatraman E. Seshan
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/DNAcopy | | Last Changed Rev: 27709 / Revision: 30966 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/DNAcopy.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'DNAcopy/DESCRIPTION' ... OK
* this is package 'DNAcopy' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DNAcopy' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating DNAcopy-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating DNAcopy-manual.tex ... OK
* checking DNAcopy-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/DNAcopy.Rcheck
---------- Making package DNAcopy ------------
adding build stamp to DESCRIPTION
making DLL ...
making flchoose.d from flchoose.c
making fphyper.d from fphyper.c
making fpnorm.d from fpnorm.c
making rshared.d from rshared.c
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c flchoose.c -o flchoose.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c fphyper.c -o fphyper.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c fpnorm.c -o fpnorm.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c rshared.c -o rshared.o
gfortran-sjlj -O3 -c changepoints.f -o changepoints.o
gfortran-sjlj -O3 -c getbdry.f -o getbdry.o
gfortran-sjlj -O3 -c hybcpt.f -o hybcpt.o
gfortran-sjlj -O3 -c prune.f -o prune.o
gfortran-sjlj -O3 -c segmentp.f -o segmentp.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i DNAcopy_res.rc -o DNAcopy_res.o
gcc-sjlj -std=gnu99 -shared -s -o DNAcopy.dll DNAcopy.def flchoose.o fphyper.o fpnorm.o rshared.o changepoints.o getbdry.o hybcpt.o prune.o segmentp.o DNAcopy_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lgfortran -lR
... DLL made
installing DLL
installing R files
installing demos
installing inst files
installing data files
preparing package DNAcopy for lazy data loading
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'DNAcopy'
Formats: text html latex example chm
CNA text html latex example chm
DNAcopy-internal text html latex chm
DNAcopy text html latex chm
coriell text html latex chm
cytoBand text html latex chm
getbdry text html latex chm
plot.DNAcopy text html latex example chm
segment text html latex example chm
segments.p text html latex example chm
smooth.CNA text html latex example chm
subset.CNA text html latex example chm
subset.DNAcopy text html latex chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "ogram Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\DNAcopy.Rcheck\00_pkg_src\DNAcopy\chm\DNAcopy.chm
HHC4016: Warning: Cannot open "ogram Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (DNAcopy)