DEDS 1.12.1
Yuanyuan Xiao
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/DEDS | | Last Changed Rev: 30593 / Revision: 30966 | | Last Changed Date: 2008-03-19 19:56:06 -0700 (Wed, 19 Mar 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/DEDS.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'DEDS/DESCRIPTION' ... OK
* this is package 'DEDS' version '1.12.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DEDS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating DEDS-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating DEDS-manual.tex ... OK
* checking DEDS-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/DEDS.Rcheck
---------- Making package DEDS ------------
adding build stamp to DESCRIPTION
making DLL ...
making deds.d from deds.c
making distance.d from distance.c
making input.d from input.c
making manip.d from manip.c
making random.d from random.c
making sampling.d from sampling.c
making stat_fun.d from stat_fun.c
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c deds.c -o deds.o
deds.c: In function 'type2stat':
deds.c:451: warning: 'test' may be used uninitialized in this function
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c distance.c -o distance.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c input.c -o input.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c manip.c -o manip.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c random.c -o random.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c sampling.c -o sampling.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c stat_fun.c -o stat_fun.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i DEDS_res.rc -o DEDS_res.o
gcc-sjlj -std=gnu99 -shared -s -o DEDS.dll DEDS.def deds.o distance.o input.o manip.o random.o sampling.o stat_fun.o DEDS_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
Note: unmatched right brace in 'comp.ebayes' on or after line 38
Note: unmatched right brace in 'comp.ebayes.Rd' on or after line 38
>>> Building/Updating help pages for package 'DEDS'
Formats: text html latex example chm
ApoA1 text html latex chm
DEDS-internal text html latex chm
affySpikeIn text html latex chm
aggregateFun text html latex example chm
comp.B text html latex example chm
comp.F text html latex example chm
comp.FC text html latex example chm
comp.SAM text html latex example chm
comp.adjp text html latex example chm
comp.ebayes text html latex example chm
comp.fdr text html latex example chm
comp.modF text html latex example chm
comp.modt text html latex example chm
comp.stat text html latex example chm
comp.t text html latex example chm
comp.unadjp text html latex example chm
deds.chooseTest text html latex example chm
deds.class text html latex chm
deds.genExtra text html latex example chm
deds.pval text html latex example chm
deds.stat text html latex example chm
deds.stat.linkC text html latex example chm
hist.DEDS text html latex example chm
pairs.DEDS text html latex example chm
qqnorm.DEDS text html latex example chm
topgenes text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "x;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\DEDS.Rcheck\00_pkg_src\DEDS\chm\DEDS.chm
HHC4016: Warning: Cannot open "x;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package DEDS for lazy loading
adding MD5 sums
* DONE (DEDS)