beadarraySNP 1.4.0 Jan Oosting
Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/beadarraySNP | Last Changed Rev: 27709 / Revision: 30807 | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | [ OK ] |
INSTALLATION WITH 'R CMD INSTALL beadarraySNP_1.4.0.tar.gz'
* Installing to library 'beadarraySNP.buildbin-libdir'
* Installing *source* package 'beadarraySNP' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: tools
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: quantsmooth
Loading required package: quantreg
Loading required package: SparseM
Package SparseM (0.77) loaded. To cite, see citation("SparseM")
Loading required package: lodplot
Loading required package: grid
** help
>>> Building/Updating help pages for package 'beadarraySNP'
Formats: text html latex example
CopynumberConversion text html latex example
Datasets text html latex
GenomicReports text html latex example
PolarTransforms text html latex example
QCIllumina-class text html latex
alterCN text html latex
arrayType text html latex
backgroundCorrect.SNP text html latex example
backgroundEstimate text html latex example
calculateLOH text html latex example
calculateQCarray text html latex example
class.SnpSetIllumina text html latex
compareGenotypes text html latex example
createCNSummary text html latex
getDNAindex text html latex
heterozygosity text html latex example
heterozygousSNPs text html latex example
interactiveCNselect text html latex
normalizeBetweenAlleles.SNP text html latex example
normalizeLoci.SNP text html latex example
normalizeWithinArrays.SNP text html latex example
pdfChromosomesSmoothCopyNumber text html latex example
pdfQC text html latex
plotGoldenGate4OPA text html latex
plotQC text html latex example
read.SnpSetIllumina text html latex example
removeLowQualityProbes text html latex
removeLowQualitySamples text html latex example
renameOPA text html latex example
reportGenotypeSegmentation text html latex
reportSamplePanelQC-methods text html latex example
segmentate text html latex
setRealCN text html latex
smoothed.intensity text html latex example
standardNormalization text html latex example
** building package indices ...
* DONE (beadarraySNP)