arrayMagic 1.16.1
Andreas Buness
| Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/arrayMagic | | Last Changed Rev: 28793 / Revision: 30807 | | Last Changed Date: 2007-11-16 14:13:10 -0800 (Fri, 16 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/arrayMagic.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'arrayMagic/DESCRIPTION' ... OK
* this is package 'arrayMagic' version '1.16.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'arrayMagic' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Error in e[[4]] : subscript out of bounds
Calls: <Anonymous> ... collectUsageArgs -> walkCode -> h -> walkCode -> typeof
Execution halted
Error in e[[4]] : subscript out of bounds
Calls: <Anonymous> ... collectUsageArgs -> walkCode -> h -> walkCode -> typeof
Execution halted
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.imageMatrix':
plot.imageMatrix
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* creating arrayMagic-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating arrayMagic-manual.tex ... OK
* checking arrayMagic-manual.tex ... OK
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/arrayMagic.Rcheck
---------- Making package arrayMagic ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
preparing package arrayMagic for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
installing man source files
installing indices
installing help
Note: unmatched right brace in 'readpDataSlides' on or after line 63
Note: unmatched right brace in 'readpDataSlides.Rd' on or after line 63
>>> Building/Updating help pages for package 'arrayMagic'
Formats: text html latex example chm
arrayData-class text html latex example chm
cbind.arrayData text html latex example chm
cbind.exprSetRG text html latex example chm
colCors text html latex example chm
controlledApply text html latex example chm
controlledSubsetting text html latex example chm
detectReplicas text html latex example chm
exprSetRG-class text html latex example chm
fdc text html latex example chm
interweave text html latex example chm
normalise text html latex example chm
plot.imageMatrix text html latex example chm
plotDistributions text html latex example chm
processArrayData text html latex example chm
processArrayDataObject text html latex example chm
qualityDiagnostics text html latex example chm
qualityParameters text html latex example chm
readIntensities text html latex example chm
readpDataSlides text html latex example chm
removeSpots text html latex example chm
simpleApply text html latex example chm
slideMerge text html latex example chm
spatialLayout text html latex example chm
spotMerge text html latex example chm
visualiseHybridisations text html latex example chm
visualiseQualityParameters text html latex example chm
write.htmltable text html latex example chm
writeToFile text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.1-bioc\meat\arrayMagic.Rcheck\00_pkg_src\arrayMagic\chm\arrayMagic.chm
Compile time: 0 minutes, 1 second
29 Topics
247 Local links
1 Internet link
1 Graphic
Created e:\biocbld\bbs-2.1-bioc\meat\arrayMagic.Rcheck\00_pkg_src\arrayMagic\chm\arrayMagic.chm, 71,853 bytes
Compression decreased file by 101,848 bytes.
adding MD5 sums
* DONE (arrayMagic)