Package: oligoClasses

Version: 1.0.1

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check oligoClasses_1.0.1.tar.gz

RetCode: 0

Time: 45.0 seconds

Status: WARNINGS

CheckDir: oligoClasses.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/oligoClasses.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'oligoClasses/DESCRIPTION' ... OK
* this is package 'oligoClasses' version '1.0.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'oligoClasses' can be installed ... WARNING
Found the following significant warnings:
       missing link(s):  eSet-class VersionedBiobase-class Versioned-class eSet-class VersionedBiobase-class Versioned-class eSet-class VersionedBiobase-class Versioned-class
See 'E:/biocbld/bbs-2.1-bioc/meat/oligoClasses.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating oligoClasses-Ex.R ... OK
* checking examples ... OK
* creating oligoClasses-manual.tex ... OK
* checking oligoClasses-manual.tex ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.1-bioc/meat/oligoClasses.Rcheck/00check.log
for details

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/oligoClasses.Rcheck


---------- Making package oligoClasses ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  preparing package oligoClasses for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'oligoClasses'
     Formats: text html latex example chm 
  DBPDInfo-class                    text    html    latex   example chm
  FeatureSet-class                  text    html    latex           chm
  FeatureSetExtensions-class        text    html    latex   example chm
  PDInfo-class                      text    html    latex   example chm
  QuantificationSet-class           text    html    latex   example chm
  SnpCallSet-methods                text    html    latex   example chm
  SnpCallSetPlus-class              text    html    latex   example chm
     missing link(s):  eSet-class VersionedBiobase-class Versioned-class eSet-class VersionedBiobase-class Versioned-class eSet-class VersionedBiobase-class Versioned-class
  SnpCnvFeatureSet-class            text    html    latex   example chm
  SnpCnvQSet-class                  text    html    latex   example chm
  SnpCopyNumberSet-methods          text    html    latex   example chm
  SnpLevelSet-class                 text    html    latex           chm
  SnpQSet-class                     text    html    latex   example chm
  SnpSetExtensions-class            text    html    latex   example chm
  oligoSnpSet-methods               text    html    latex           chm
  platformDesign-class              text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\oligoClasses.Rcheck\00_pkg_src\oligoClasses\chm\oligoClasses.chm


Compile time: 0 minutes, 0 seconds
16	Topics
87	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\oligoClasses.Rcheck\00_pkg_src\oligoClasses\chm\oligoClasses.chm, 24,929 bytes
Compression decreased file by 37,704 bytes.
  adding MD5 sums

* DONE (oligoClasses)