Package: metaArray

Version: 1.12.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check metaArray_1.12.0.tar.gz

RetCode: 0

Time: 59.5 seconds

Status: OK

CheckDir: metaArray.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/metaArray.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'metaArray/DESCRIPTION' ... OK
* this is package 'metaArray' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'metaArray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
poe.mcmc: no visible binding for global variable 'R0'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating metaArray-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating metaArray-manual.tex ... OK
* checking metaArray-manual.tex ... OK

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/metaArray.Rcheck


---------- Making package metaArray ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making contr.d from contr.c
making dproc.d from dproc.c
making dproc2.d from dproc2.c
making intcor.d from intcor.c
making lowess.d from lowess.c
making mmath.d from mmath.c
making perm.d from perm.c
making poe.d from poe.c
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS -Wall -O3  -c contr.c -o contr.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS -Wall -O3  -c dproc.c -o dproc.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS -Wall -O3  -c dproc2.c -o dproc2.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS -Wall -O3  -c intcor.c -o intcor.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS -Wall -O3  -c lowess.c -o lowess.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS -Wall -O3  -c mmath.c -o mmath.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS -Wall -O3  -c perm.c -o perm.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS -Wall -O3  -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:431: warning: suggest parentheses around comparison in operand of &
poe.c:437: warning: suggest parentheses around comparison in operand of &
poe.c:438: warning: suggest parentheses around comparison in operand of |
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include  -i metaArray_res.rc -o metaArray_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o metaArray.dll metaArray.def contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o metaArray_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin -lm   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'metaArray'
     Formats: text html latex example chm 
  Zscore                            text    html    latex   example chm
  em.draw                           text    html    latex   example chm
  find.init                         text    html    latex   example chm
  fit.em                            text    html    latex   example chm
  intcor                            text    html    latex   example chm
  logit                             text    html    latex           chm
  mdata                             text    html    latex           chm
  poe.em                            text    html    latex   example chm
  poe.mcmc                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\metaArray.Rcheck\00_pkg_src\metaArray\chm\metaArray.chm


Compile time: 0 minutes, 0 seconds
10	Topics
13	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\metaArray.Rcheck\00_pkg_src\metaArray\chm\metaArray.chm, 26,086 bytes
Compression decreased file by 2,124 bytes.
  adding MD5 sums

* DONE (metaArray)