Package: matchprobes

Version: 1.10.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check matchprobes_1.10.0.tar.gz

RetCode: 0

Time: 424.6 seconds

Status: OK

CheckDir: matchprobes.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/matchprobes.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'matchprobes/DESCRIPTION' ... OK
* this is package 'matchprobes' version '1.10.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'matchprobes' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'print.probetable':
  print.probetable

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating matchprobes-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating matchprobes-manual.tex ... OK
* checking matchprobes-manual.tex ... OK

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/matchprobes.Rcheck


---------- Making package matchprobes ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making matchprobes.d from matchprobes.c
making strutils.d from strutils.c
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c matchprobes.c -o matchprobes.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c strutils.c -o strutils.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include  -i matchprobes_res.rc -o matchprobes_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o matchprobes.dll matchprobes.def matchprobes.o strutils.o matchprobes_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package matchprobes for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'matchprobes'
     Formats: text html latex example chm 
  basecontent                       text    html    latex   example chm
  combineAffyBatch                  text    html    latex   example chm
  complementSeq                     text    html    latex   example chm
  getProbeDataAffy                  text    html    latex   example chm
  getProbeData_1lq                  text    html    latex   example chm
  longestConsecutive                text    html    latex   example chm
  makeProbePackage                  text    html    latex   example chm
  matchprobes                       text    html    latex   example chm
  print.probetable                  text    html    latex   example chm
  reverseSeq                        text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\matchprobes.Rcheck\00_pkg_src\matchprobes\chm\matchprobes.chm


Compile time: 0 minutes, 0 seconds
11	Topics
37	Local links
1	Internet link
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\matchprobes.Rcheck\00_pkg_src\matchprobes\chm\matchprobes.chm, 30,748 bytes
Compression decreased file by 9,630 bytes.
  adding MD5 sums

* DONE (matchprobes)