Package: maanova

Version: 1.8.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check maanova_1.8.0.tar.gz

RetCode: 0

Time: 52.3 seconds

Status: WARNINGS

CheckDir: maanova.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/maanova.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'maanova/DESCRIPTION' ... OK
* this is package 'maanova' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maanova' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  snow
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
matest: no visible global function definition for 'makeMPIcluster'
matest: no visible global function definition for 'clusterApply'
matest: no visible global function definition for 'clusterEvalQ'
matest: no visible global function definition for 'stopCluster'
matest.engine: multiple local function definitions for 'ttest' with
  different formal arguments
matest.perm: no visible binding for global variable 'random'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating maanova-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating maanova-manual.tex ... OK
* checking maanova-manual.tex ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.1-bioc/meat/maanova.Rcheck/00check.log
for details

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/maanova.Rcheck


---------- Making package maanova ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making makeratio.d from makeratio.c
making masvd.d from masvd.c
making shift.d from shift.c
making util.d from util.c
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c makeratio.c -o makeratio.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c masvd.c -o masvd.o
masvd.c:114:2: warning: "/*" within comment
masvd.c:154:1: warning: "/*" within comment
masvd.c:161:5: warning: "/*" within comment
masvd.c:165:2: warning: "/*" within comment
masvd.c:189:2: warning: "/*" within comment
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c shift.c -o shift.o
shift.c: In function 'shift':
shift.c:27: warning: unused variable 'k'
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c util.c -o util.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include  -i maanova_res.rc -o maanova_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o maanova.dll maanova.def makeratio.o masvd.o shift.o util.o maanova_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin -Le:/biocbld/bbs-2.1-bioc/R/bin -lRlapack   -lR
  ... DLL made
  installing DLL
  installing R files
  installing demos
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'maanova'
     Formats: text html latex example chm 
  PairContrast                      text    html    latex   example chm
  Rmaanova.version                  text    html    latex   example chm
  abf1                              text    html    latex   example chm
  adjPval                           text    html    latex   example chm
  arrayview                         text    html    latex   example chm
  consensus                         text    html    latex   example chm
  dyeswapfilter                     text    html    latex   example chm
  fill.missing                      text    html    latex   example chm
  fitmaanova                        text    html    latex   example chm
  fom                               text    html    latex   example chm
  geneprofile                       text    html    latex   example chm
  gridcheck                         text    html    latex   example chm
  kidney                            text    html    latex   example chm
  maanova-internal                  text    html    latex   example chm
  macluster                         text    html    latex   example chm
  matest                            text    html    latex   example chm
  read.madata                       text    html    latex   example chm
  resiplot                          text    html    latex   example chm
  riplot                            text    html    latex   example chm
  subset.madata                     text    html    latex   example chm
  summarytable                      text    html    latex   example chm
  transform.madata                  text    html    latex   example chm
  varplot                           text    html    latex   example chm
  volcano                           text    html    latex   example chm
  write.madata                      text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\maanova.Rcheck\00_pkg_src\maanova\chm\maanova.chm


Compile time: 0 minutes, 0 seconds
26	Topics
77	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\maanova.Rcheck\00_pkg_src\maanova\chm\maanova.chm, 69,648 bytes
Compression decreased file by 59,662 bytes.
  preparing package maanova for lazy loading
  adding MD5 sums

* DONE (maanova)