Back to the "Multiple platform build/check report"
| Package 76/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
| genArise 1.14.0 IFC Development Team Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
| wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ OK ] | OK | |
| pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
| Package: genArise |
| Version: 1.14.0 |
| Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check genArise_1.14.0.tar.gz |
| RetCode: 0 |
| Time: 65.7 seconds |
| Status: OK |
| CheckDir: genArise.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/genArise.Rcheck' * using R version 2.6.0 (2007-10-03) * checking for file 'genArise/DESCRIPTION' ... OK * this is package 'genArise' version '1.14.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'genArise' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE analysis.window : bg.question: no visible binding for '<<-' assignment to 'op.counter' analysis.window : bg.question: no visible binding for global variable 'op.counter' analysis.window : normalized.gui: no visible binding for '<<-' assignment to 'op.counter' analysis.window : normalized.gui: no visible binding for global variable 'op.counter' analysis.window : filter.gui: no visible binding for '<<-' assignment to 'op.counter' analysis.window : filter.gui: no visible binding for global variable 'op.counter' analysis.window : remove.duplicates.gui: no visible binding for '<<-' assignment to 'op.counter' analysis.window : remove.duplicates.gui: no visible binding for global variable 'op.counter' analysis.window : <anonymous>: possible error in pdf(paste(name, "OriginalCy3vsCy5.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "OriginalCy3vsCy5.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "OriginalRvsI.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "OriginalRvsI.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "OriginalMvsA.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "OriginalMvsA.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "CorrectedCy3vsCy5.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "CorrectedCy3vsCy5.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "CorrectedRvsI.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "CorrectedRvsI.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "CorrectedMvsA.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "CorrectedMvsA.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "NormalCy3vsCy5.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "NormalCy3vsCy5.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "NormalRvsI.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "NormalRvsI.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "NormalMvsA.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "NormalMvsA.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "FilterCy3vsCy5.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "FilterCy3vsCy5.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "FilterRvsI.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "FilterRvsI.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "FilterMvsA.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "FilterMvsA.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "NoDuplicatesCy3vsCy5.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "NoDuplicatesCy3vsCy5.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "NoDuplicatesRvsI.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "NoDuplicatesRvsI.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "NoDuplicatesMvsA.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "NoDuplicatesMvsA.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window: no visible binding for '<<-' assignment to 'op.counter' analysis.window: no visible binding for global variable 'op.counter' annotations: no visible global function definition for 'print.xtable' genArise.init: no visible binding for '<<-' assignment to 'op.counter' genArise.init : nuevo.project: no visible global function definition for 'select.experiments' old.project : save.pdf: possible error in pdf(name, horiz = F, height = 8, width = 8, title = paste(name, sep = "_")): unused argument(s) (horiz = F) old.project : <anonymous>: possible error in pdf(paste(name, ".pdf", sep = ""), horiz = FALSE, height = 8, width = 8, title = name): unused argument(s) (horiz = FALSE) principal : save.as.pdf: possible error in pdf(paste(name, "R&G.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "R&G.pdf", sep = "_")): unused argument(s) (horiz = F) principal : save.as.pdf: possible error in pdf(paste(name, "BgCy5.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "BgCy5.pdf", sep = "_")): unused argument(s) (horiz = F) principal : save.as.pdf: possible error in pdf(paste(name, "BgCy3.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "BgCy3.pdf", sep = "_")): unused argument(s) (horiz = F) principal : save.as.pdf: possible error in pdf(paste(name, "Swap.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "Swap.pdf", sep = "_")): unused argument(s) (horiz = F) Zscore.points : <anonymous>: possible error in pdf(paste(name, ".pdf", sep = ""), horiz = FALSE, height = 8, width = 8, title = name): unused argument(s) (horiz = FALSE) Found possibly global 'T' or 'F' in the following functions: analysis.window old.project principal * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating genArise-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating genArise-manual.tex ... OK * checking genArise-manual.tex ... OK
genArise.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/genArise.Rcheck
---------- Making package genArise ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'genArise'
Formats: text html latex example chm
DataSet-class text html latex chm
Simon text html latex example chm
Spot-class text html latex chm
WT.dataset text html latex example chm
Zscore text html latex example chm
Zscore.plot text html latex example chm
Zscore.points text html latex chm
a.arise text html latex example chm
alter.unique text html latex example chm
analysis.window text html latex chm
annotations text html latex chm
back.gui text html latex chm
bg.correct text html latex example chm
classes text html latex chm
create.project text html latex chm
cys.plot text html latex example chm
filter.spot text html latex example chm
genArise text html latex chm
genArise.init text html latex chm
genMerge text html latex chm
get.Zscore text html latex chm
get.values text html latex chm
global.norm text html latex example chm
graphic.choose text html latex chm
grid.norm text html latex example chm
help text html latex chm
i.arise text html latex example chm
imageLimma text html latex example chm
m.arise text html latex example chm
ma.plot text html latex example chm
make.swap text html latex chm
meanUnique text html latex example chm
note text html latex chm
old.project text html latex chm
post.analysis text html latex chm
principal text html latex chm
projects.select text html latex chm
r.arise text html latex example chm
read.dataset text html latex chm
read.spot text html latex chm
reset.history text html latex chm
ri.plot text html latex example chm
set.grid.properties text html latex chm
set.history.project text html latex chm
set.path.project text html latex chm
set.project.properties text html latex chm
single.norm text html latex chm
spotUnique text html latex example chm
swap.select text html latex chm
trim text html latex example chm
write.dataSet text html latex example chm
write.spot text html latex example chm
write.zscore text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.1-bioc\meat\genArise.Rcheck\00_pkg_src\genArise\chm\genArise.chm
Compile time: 0 minutes, 1 second
54 Topics
119 Local links
2 Internet links
1 Graphic
Created e:\biocbld\bbs-2.1-bioc\meat\genArise.Rcheck\00_pkg_src\genArise\chm\genArise.chm, 46,551 bytes
Compression decreased file by 61,276 bytes.
preparing package genArise for lazy loading
Loading required package: locfit
Loading required package: akima
Loading required package: lattice
Loading required package: tkrplot
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: xtable
adding MD5 sums
* DONE (genArise)