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| Package 72/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
| flowCore 1.4.0 Nolwenn Le Meur Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
| wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
| pitt | Mac OS X (10.4.10) | i386 | [ OK ] | OK | OK |
| Package: flowCore |
| Version: 1.4.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build flowCore |
| RetCode: 0 |
| Time: 56.7 seconds |
| Status: OK |
| PackageFile: flowCore_1.4.0.tar.gz |
* checking for file 'flowCore/DESCRIPTION' ... OK
* preparing 'flowCore':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'flowCore' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -fPIC -g -O2 -Wall -march=nocona -c biexponential.c -o biexponential.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -fPIC -g -O2 -Wall -march=nocona -c inPolygon.c -o inPolygon.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c biexponential.c -o biexponential.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: rrcov
Loading required package: robustbase
Scalable Robust Estimators with High Breakdown Point (version 0.4-01)
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Creating a new generic function for "colnames" in "flowCore"
Creating a new generic function for "colnames<-" in "flowCore"
Creating a new generic function for "nrow" in "flowCore"
Creating a new generic function for "ncol" in "flowCore"
** help
>>> Building/Updating help pages for package 'flowCore'
Formats: text html latex example
GvHD text html latex
KmeansFilter text html latex example
Subset-methods text html latex example
arcsinhTransform text html latex example
biexponentialTransform text html latex example
coerce text html latex example
compensate text html latex example
concreteFilter-class text html latex
each_col text html latex example
ellipsoidGate text html latex example
expressionFilter-class text html latex
filter-and-methods text html latex
filter-class text html latex
filter-in-methods text html latex example
filter-on-methods text html latex example
filter text html latex example
filterDetails-methods text html latex
filterReference-class text html latex example
filterResult-class text html latex example
filterSet-class text html latex example
flowFrame-class text html latex
flowSet-class text html latex example
flowSet text html latex
fsApply text html latex example
identifier text html latex example
keyword-methods text html latex example
linearTransform text html latex example
lnTransform text html latex example
logTransform text html latex example
logicalFilterResult-class text html latex example
logicleTransform text html latex example
manyFilterResult-class text html latex example
multipleFilterResult-class text html latex example
norm2Filter-class text html latex example
parameterFilter-class text html latex
parameters text html latex example
print.filterSummary text html latex example
quadraticTransform text html latex example
randomFilterResult-class text html latex
read.FCS text html latex example
read.FCSheader text html latex example
read.flowSet text html latex example
rectangleGate text html latex example
sampleFilter-class text html latex example
sampleFilter text html latex example
scaleTransform text html latex example
setOperationFilter-class text html latex
spillover-flowSet text html latex
splitScaleTransform text html latex example
transform-class text html latex example
transformFilter-class text html latex example
transformList-class text html latex example
transformMap-class text html latex example
truncateTransform text html latex example
** building package indices ...
* DONE (flowCore)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'flowCore/unitTests/standardsCompliance/Compensation-ML_ComplianceTests' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/FCS_ComplianceTests' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Gating-ML_ComplianceTests/ValidGateTests/FCS_Files' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Gating-ML_ComplianceTests/ValidGateTests/RUnitScript_Files' is empty
WARNING: directory 'flowCore/unitTests/standardsCompliance/Transformation-ML_ComplianceTests' is empty
* building 'flowCore_1.4.0.tar.gz'