Package: edd

Version: 1.16.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check edd_1.16.0.tar.gz

RetCode: 0

Time: 139.4 seconds

Status: OK

CheckDir: edd.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/edd.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'edd/DESCRIPTION' ... OK
* this is package 'edd' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'edd' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating edd-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating edd-manual.tex ... OK
* checking edd-manual.tex ... OK

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/edd.Rcheck


---------- Making package edd ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package edd for lazy loading
Loading required package: golubEsets
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: class
Loading required package: nnet
Loading required package: xtable
  installing man source files
  installing indices
  installing help
Note: unmatched right brace in 'eddObsolete' on or after line 54
Note: unmatched right brace in 'eddObsolete.Rd' on or after line 54
 >>> Building/Updating help pages for package 'edd'
     Formats: text html latex example chm 
  centerScale                       text    html    latex   example chm
  edd                               text    html    latex   example chm
  eddDist-class                     text    html    latex   example chm
  eddObsolete                       text    html    latex   example chm
  flatQQNorm                        text    html    latex   example chm
  latEDtable                        text    html    latex   example chm
  makeCandmat.raw                   text    html    latex   example chm
  maxKSp                            text    html    latex   example chm
  plotED                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\edd.Rcheck\00_pkg_src\edd\chm\edd.chm


Compile time: 0 minutes, 0 seconds
10	Topics
72	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\edd.Rcheck\00_pkg_src\edd\chm\edd.chm, 30,492 bytes
Compression decreased file by 16,581 bytes.
  adding MD5 sums

* DONE (edd)