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Package 24/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
arrayQuality 1.14.0 Agnes Paquet Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ OK ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: arrayQuality |
Version: 1.14.0 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check arrayQuality_1.14.0.tar.gz |
RetCode: 0 |
Time: 134.8 seconds |
Status: OK |
CheckDir: arrayQuality.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/arrayQuality.Rcheck' * using R version 2.6.0 (2007-10-03) * checking for file 'arrayQuality/DESCRIPTION' ... OK * this is package 'arrayQuality' version '1.14.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'arrayQuality' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE arrayScal: no visible binding for global variable 'MmReferenceDB' getSpikeIds: no visible binding for global variable 'MEEBOset' getSpikeIndex: no visible binding for global variable 'MEEBOset' heeboQuality: no visible binding for global variable 'HEEBOset' heeboQuality: no visible binding for global variable 'HEEBOctrl' heeboQuality: no visible binding for global variable 'HEEBOtilingres' heeboQualityPlots: no visible binding for global variable 'HEEBOset' meeboQuality: no visible binding for global variable 'MEEBOset' meeboQuality: no visible binding for global variable 'MEEBOctrl' meeboQuality: no visible binding for global variable 'MEEBOtilingres' meeboQualityPlots: no visible binding for global variable 'MEEBOset' PRvQCHyb: no visible binding for global variable 'MmDEGenes' qpBEplot.linear: no visible binding for global variable 'MEEBOctrl' qpBoxplotMeebo: no visible binding for global variable 'MEEBOset' qpDotPlotsEEBO: no visible binding for global variable 'MEEBOset' qpDotPlotsMeebo: no visible binding for global variable 'MEEBOset' qpMisMatchPlot: no visible binding for global variable 'HEEBOctrl' qpTiling: no visible binding for global variable 'MEEBOtilingres' qualBoxplot: no visible binding for global variable 'MmReferenceDB' qualBoxplot: no visible binding for global variable 'HsReferenceDB' qualityScore: no visible binding for global variable 'MmReferenceDB' readAllSpikes: no visible binding for global variable 'MEEBOset' scaleRefTable: no visible binding for global variable 'MmReferenceDB' Spike.Cy5vsCy3: no visible binding for global variable 'MEEBOset' Spike.Cy5vsCy3: no visible binding for global variable 'RG' Spike.Individual.Sensitivity: no visible binding for global variable 'RG' Spike.Individual.Sensitivity: no visible binding for global variable 'MEEBOset' Spike.Individual.Sensitivity: no visible binding for global variable 'MEEBOctrl' Spike.MMplot: no visible binding for global variable 'RG' Spike.MMplot: no visible binding for global variable 'MEEBOset' Spike.MM.Scatter: no visible binding for global variable 'RG' Spike.MM.Scatter: no visible binding for global variable 'MEEBOset' Spike.Sensitivity: no visible binding for global variable 'RG' Spike.Sensitivity: no visible binding for global variable 'MEEBOset' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating arrayQuality-Ex.R ... OK * checking examples ... OK * creating arrayQuality-manual.tex ... OK * checking arrayQuality-manual.tex ... OK
arrayQuality.Rcheck/00install.out:
* Installing *source* package 'arrayQuality' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: marray Loading required package: limma Loading required package: convert Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: hexbin Loading required package: grid Loading required package: lattice Loading required package: gridBase Loading required package: RColorBrewer Warning in namespaceImportFrom(self, asNamespace(ns)) : replacing previous import: summary ** help Note: unmatched right brace in 'PRv9mers' on or after line 36 Note: unmatched right brace in 'scaleRefTable' on or after line 11 Note: unmatched right brace in 'scaleRefTable' on or after line 32 >>> Building/Updating help pages for package 'arrayQuality' Formats: text html latex example MmDEGenes text html latex PRv9mers text html latex example PRvQCHyb text html latex example agQuality text html latex example arrayQuality-internal text html latex globalQuality text html latex example gpQuality text html latex example gprDB text html latex heeboQuality text html latex example heeboQualityPlots text html latex example maQualityPlots text html latex example meeboQuality text html latex example meeboQualityPlots text html latex example prdata text html latex qualBoxplot text html latex example qualityScore text html latex readAgilent text html latex example readGPR text html latex example readSpikeTypes text html latex example readSpot text html latex example readcontrolCode text html latex scaleRefTable text html latex slideQuality text html latex example spotQuality text html latex example ** building package indices ... * DONE (arrayQuality)