Package: ScISI

Version: 1.10.0

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build ScISI

RetCode: 0

Time: 391.4 seconds

Status: OK

PackageFile: ScISI_1.10.0.tar.gz

* checking for file 'ScISI/DESCRIPTION' ... OK
* preparing 'ScISI':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'ScISI' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: apComplex
Loading required package: graph
Loading required package: RBGL
Loading required package: GO
Loading required package: GOstats
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RSQLite

Attaching package: 'GO.db'


	The following object(s) are masked from package:GO :

	 GOBPANCESTOR,
	 GOBPCHILDREN,
	 GOBPOFFSPRING,
	 GOBPPARENTS,
	 GOCCANCESTOR,
	 GOCCCHILDREN,
	 GOCCOFFSPRING,
	 GOCCPARENTS,
	 GOMAPCOUNTS,
	 GOMFANCESTOR,
	 GOMFCHILDREN,
	 GOMFOFFSPRING,
	 GOMFPARENTS,
	 GOOBSOLETE,
	 GOSYNONYM,
	 GOTERM 

Loading required package: annotate
Loading required package: xtable
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: Rgraphviz

Attaching package: 'Rgraphviz'


	The following object(s) are masked from package:annotate :

	 toFile 

Loading required package: YEAST
Loading required package: Rintact
Loading required package: XML

Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 

Loading required package: ppiStats
Loading required package: ppiData
Loading required package: hypergraph
** help
 >>> Building/Updating help pages for package 'ScISI'
     Formats: text html latex example 
  Desc-methods                      text    html    latex
  ID-methods                        text    html    latex
  JaccardCoef                       text    html    latex   example
  ScISI                             text    html    latex   example
  ScISI2html                        text    html    latex   example
  arp23                             text    html    latex   example
  arp23G                            text    html    latex   example
  arp23Orf                          text    html    latex   example
  arp23Y2HG                         text    html    latex   example
  calcGraphStats                    text    html    latex   example
  cfia                              text    html    latex   example
  cfiaOrf                           text    html    latex   example
  checkComplex                      text    html    latex   example
  checkSGN                          text    html    latex   example
  compBijection                     text    html    latex   example
  compareComplex                    text    html    latex   example
  createGODataFrame                 text    html    latex   example
  createGOMatrix                    text    html    latex   example
  createMipsDataFrame               text    html    latex   example
  createMipsMatrix                  text    html    latex   example
  createYeastDataObj                text    html    latex   example
  dataS                             text    html    latex   example
  eAt                               text    html    latex   example
  eAt2                              text    html    latex   example
  edgeProp                          text    html    latex   example
  egEBI16112                        text    html    latex   example
  expStats                          text    html    latex   example
  findSubComp                       text    html    latex   example
  gavin2mergeMG                     text    html    latex   example
  getAPMSData                       text    html    latex   example
  getGOInfo                         text    html    latex   example
  getLocOrfs                        text    html    latex   example
  getMipsInfo                       text    html    latex   example
  getURL-methods                    text    html    latex
  graphSumStats                     text    html    latex   example
  ho2mergeMGG                       text    html    latex   example
  krogan2mergeMGGH                  text    html    latex   example
  locScISI                          text    html    latex   example
  mapping2SysG                      text    html    latex   example
  mappingsG                         text    html    latex   example
  maximizeSimilarity                text    html    latex   example
  meanDeg                           text    html    latex   example
  mergeBGMat                        text    html    latex   example
  mips2go                           text    html    latex   example
  nAt                               text    html    latex
  nAtMap                            text    html    latex   example
  nonGenes                          text    html    latex   example
  nucComp                           text    html    latex   example
  recCompSize                       text    html    latex   example
  redundantM                        text    html    latex   example
  rmByEvi                           text    html    latex   example
  runAlignment                      text    html    latex   example
  runCompareComplex                 text    html    latex   example
  subCompM                          text    html    latex   example
  sumStats                          text    html    latex   example
  unWantedComp                      text    html    latex   example
  unwanted                          text    html    latex   example
  xtraGO                            text    html    latex   example
  xtraGONodes                       text    html    latex   example
  yeastData-class                   text    html    latex   example
** building package indices ...
* DONE (ScISI)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'ScISI_1.10.0.tar.gz'