Package: Ringo

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build Ringo

RetCode: 0

Time: 19.9 seconds

Status: OK

PackageFile: Ringo_1.2.0.tar.gz

* checking for file 'Ringo/DESCRIPTION' ... OK
* preparing 'Ringo':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'Ringo' ...
** libs
** arch - i386
g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -Wall -march=nocona -c mmedian.cpp -o mmedian.o
g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Ringo.so mmedian.o   -F/Library/Frameworks/R.framework/.. -framework R 
** arch - ppc
g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c mmedian.cpp -o mmedian.o
g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Ringo.so mmedian.o   -F/Library/Frameworks/R.framework/.. -framework R 
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: limma
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: RColorBrewer
** help
 >>> Building/Updating help pages for package 'Ringo'
     Formats: text html latex example 
  Ringo-internal                    text    html    latex
  arrayImage                        text    html    latex   example
  asExprSet                         text    html    latex   example
  autocorr                          text    html    latex   example
  chipAlongChrom                    text    html    latex   example
  computeRunningMedians             text    html    latex   example
  compute_gc                        text    html    latex   example
  corrPlot                          text    html    latex   example
  findPeaksOnSmoothed               text    html    latex   example
  ftr2xys                           text    html    latex   example
  newPeak                           text    html    latex   example
  nimblegenNorm                     text    html    latex
  peakByThreshold                   text    html    latex   example
  peakClass                         text    html    latex   example
  plotAutocorr                      text    html    latex   example
  plot_peak                         text    html    latex   example
  preprocess                        text    html    latex   example
  readNimblegen                     text    html    latex   example
  relatePeaks                       text    html    latex   example
  sliding_quantile                  text    html    latex   example
** building package indices ...
* DONE (Ringo)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Ringo_1.2.0.tar.gz'