Package: AnnotationDbi

Version: 1.0.4

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check AnnotationDbi_1.0.4.tar.gz

RetCode: 0

Time: 730.6 seconds

Status: OK

CheckDir: AnnotationDbi.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/AnnotationDbi.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'AnnotationDbi/DESCRIPTION' ... OK
* this is package 'AnnotationDbi' version '1.0.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AnnotationDbi' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating AnnotationDbi-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating AnnotationDbi-manual.tex ... OK
* checking AnnotationDbi-manual.tex ... OK

* Installing *source* package 'AnnotationDbi' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RSQLite
Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Creating a new generic function for "sample" in "AnnotationDbi"
** help
 >>> Building/Updating help pages for package 'AnnotationDbi'
     Formats: text html latex example 
  AnnDbBimap-envirAPI               text    html    latex   example
  AnnDbObj-class                    text    html    latex   example
  AnnDbPkg-checker                  text    html    latex   example
  AnnDbPkg-maker                    text    html    latex   example
  AnnotationDbi-internals           text    html    latex
  Bimap-colmethods                  text    html    latex   example
  Bimap-direction                   text    html    latex   example
  Bimap-keymethods                  text    html    latex   example
  Bimap-toTable                     text    html    latex   example
  Bimap                             text    html    latex   example
  BimapFormatting                   text    html    latex   example
  GOTerms-class                     text    html    latex   example
  make_eg_to_go_map                 text    html    latex   example
  toSQLStringSet                    text    html    latex   example
** building package indices ...
* DONE (AnnotationDbi)