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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 242/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
vsn3.0.12Wolfgang HuberLast Changed Date: 2007-08-24 01:44:36 -0700 Last Changed Rev: 26623 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | [ OK ] |
Package: vsn |
Version: 3.0.12 |
Command: /Users/biocbuild/BBS/utils/build-universal.sh vsn_3.0.12.tar.gz /Library/Frameworks/R.framework/Resources/bin/R vsn.buildbin-libdir |
RetCode: 0 |
Time: 11.8 seconds |
Status: OK |
PackageFile: vsn_3.0.12.tgz |
INSTALLATION WITH 'R CMD INSTALL vsn_3.0.12.tar.gz' * Installing to library 'vsn.buildbin-libdir' * Installing *source* package 'vsn' ... ** libs ** arch - i386 gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -Wall -std=gnu99 -march=nocona -c init.c -o init.o gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -Wall -std=gnu99 -march=nocona -c vsn.c -o vsn.o gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -Wall -std=gnu99 -march=nocona -c vsn2.c -o vsn2.o gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o vsn.so init.o vsn.o vsn2.o -F/Library/Frameworks/R.framework/.. -framework R ** arch - ppc gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c init.c -o init.o gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c vsn.c -o vsn.o gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c vsn2.c -o vsn2.o gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o vsn.so init.o vsn.o vsn2.o -F/Library/Frameworks/R.framework/.. -framework R ** R ** data ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affy Loading required package: affyio Loading required package: preprocessCore Creating a new generic function for "logLik" in "vsn" Creating a new generic function for "coef" in "vsn" Creating a new generic function for "coefficients" in "vsn" ** help >>> Building/Updating help pages for package 'vsn' Formats: text html latex example class.vsn text html latex example class.vsnInput text html latex example getIntensityMatrix text html latex example justvsn text html latex example kidney text html latex example lymphoma text html latex example meanSdPlot text html latex example normalize.AffyBatch.vsn text html latex example sagmbSimulateData text html latex example scalingFactorTransformation text html latex example vsn text html latex example vsn2 text html latex example vsn2trsf text html latex example vsnLikelihood text html latex example vsnPlotPar text html latex example vsnh text html latex example ** building package indices ... * DONE (vsn)