Package: topGO

Version: 1.3.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build topGO

RetCode: 1

Time: 95.6 seconds

Status: ERROR

PackageFile: None

* checking for file 'topGO/DESCRIPTION' ... OK
* preparing 'topGO':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'topGO' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: GO
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: SparseM
Package SparseM (0.73) loaded.  To cite, see citation("SparseM")
Creating a new generic function for "print" in "topGO"
** help
Note: unmatched right brace in 'buildGOgraph.topology' on or after line 21
Note: unmatched right brace in 'classicScore-class' on or after line 69
 >>> Building/Updating help pages for package 'topGO'
     Formats: text html latex example 
  GOFisherTest                      text    html    latex
  GOKSTest                          text    html    latex
  GOdata                            text    html    latex   example
  annFUN.hgu                        text    html    latex   example
  buildGOgraph.topology             text    html    latex
  buildLevels                       text    html    latex   example
  classicCount-class                text    html    latex   example
  classicScore-class                text    html    latex   example
  elimCount-class                   text    html    latex   example
  elimScore-class                   text    html    latex   example
  getPvalues                        text    html    latex   example
  getSigGroups                      text    html    latex   example
  groupGOTerms                      text    html    latex   example
  groupStats-class                  text    html    latex   example
  inducedGraph                      text    html    latex   example
  mapGenes2GOgraph                  text    html    latex   example
  printGenes-methods                text    html    latex
  printGraph-methods                text    html    latex   example
  reverseArch                       text    html    latex   example
  topGO-package                     text    html    latex
  topGOdata-class                   text    html    latex   example
  topGOresult-class                 text    html    latex
  weightCount-class                 text    html    latex   example
  weightScore-class                 text    html    latex
** building package indices ...
* DONE (topGO)
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: GO
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: SparseM
Loading required package: survival
Loading required package: splines
Loading required package: multtest

Error: processing vignette 'topGO.Rnw' failed with diagnostics:
 chunk 31 
Error in eval.with.vis(expr, .GlobalEnv, baseenv()) : 
  could not find function "print.xtable"
Execution halted