Package: prism

Version: 0.1.1

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build prism

RetCode: 0

Time: 31.3 seconds

Status: OK

PackageFile: prism_0.1.1.tar.gz

* checking for file 'prism/DESCRIPTION' ... OK
* preparing 'prism':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst489655874


---------- Making package prism ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making bisegment.d from bisegment.c
making find_grid.d from find_grid.c
making util.d from util.c
gcc   -Ie:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c bisegment.c -o bisegment.o
bisegment.c: In function `R_link_bisegment':
bisegment.c:136: warning: unused variable `bi'
bisegment.c:136: warning: unused variable `bj'
bisegment.c:144: warning: unused variable `gamma_start'
bisegment.c: In function `bisegment':
bisegment.c:314: warning: unused variable `kk'
bisegment.c:314: warning: unused variable `iii'
bisegment.c:314: warning: unused variable `jjj'
bisegment.c:314: warning: unused variable `l'
bisegment.c:321: warning: unused variable `stop_criteria_M'
bisegment.c:325: warning: unused variable `i_start'
bisegment.c:325: warning: unused variable `i_end'
bisegment.c:326: warning: unused variable `j_start'
bisegment.c:326: warning: unused variable `j_end'
bisegment.c:460: warning: no return statement in function returning non-void
bisegment.c: In function `initialize_image':
bisegment.c:633: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function `up_date_beta_mrf':
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:781: warning: suggest parentheses around comparison in operand of &
bisegment.c:784: warning: suggest parentheses around comparison in operand of &
bisegment.c:789: warning: suggest parentheses around comparison in operand of &
bisegment.c:794: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function `up_date_w':
bisegment.c:873: warning: unused variable `nb_pixel'
bisegment.c:874: warning: unused variable `sum_res'
bisegment.c: In function `compute_difference':
bisegment.c:887: warning: unused variable `i'
bisegment.c: In function `compute_uncertainty':
bisegment.c:901: warning: unused variable `iii'
bisegment.c:901: warning: unused variable `jjj'
bisegment.c:904: warning: unused variable `nb_flagged'
bisegment.c: In function `bisegment_mcmc':
bisegment.c:981: warning: unused variable `countrho'
bisegment.c:982: warning: unused variable `iii'
bisegment.c:982: warning: unused variable `jjj'
bisegment.c:982: warning: unused variable `l'
bisegment.c:988: warning: unused variable `nb_spot'
bisegment.c:989: warning: unused variable `log_like_rho'
bisegment.c:990: warning: unused variable `log_like_rho_new'
bisegment.c:991: warning: unused variable `rho_new'
bisegment.c:1000: warning: unused variable `nb_pix'
bisegment.c:1285: warning: no return statement in function returning non-void
bisegment.c: In function `slice_sampling_lambda_eps':
bisegment.c:1830: warning: suggest parentheses around comparison in operand of &
bisegment.c:1839: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function `change_resolution_mcmc':
bisegment.c:2120: warning: suggest parentheses around comparison in operand of &
bisegment.c:2122: warning: suggest parentheses around comparison in operand of &
bisegment.c:2124: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function `bisegment':
bisegment.c:460: warning: control reaches end of non-void function
bisegment.c: In function `bisegment_mcmc':
bisegment.c:1285: warning: control reaches end of non-void function
gcc   -Ie:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c find_grid.c -o find_grid.o
find_grid.c: In function `find_grid':
find_grid.c:12: warning: 'index_min' might be used uninitialized in this function
gcc   -Ie:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c util.c -o util.o
util.c: In function `qr_solve':
util.c:623: warning: implicit declaration of function `dqrdc2_'
util.c:638: warning: implicit declaration of function `dqrcf_'
util.c:602: warning: unused variable `vmax'
util.c: In function `inverse':
util.c:661: warning: unused variable `j'
util.c: In function `product_mat_vec':
util.c:708: warning: unused variable `k'
util.c: In function `slice_sampling_phi':
util.c:816: warning: suggest parentheses around comparison in operand of &
util.c:824: warning: suggest parentheses around comparison in operand of &
util.c:798: warning: unused variable `v'
util.c: In function `slice_sampling_lxi':
util.c:871: warning: suggest parentheses around comparison in operand of &
util.c:880: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_lambda':
util.c:943: warning: suggest parentheses around comparison in operand of &
util.c:952: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_b':
util.c:1008: warning: suggest parentheses around comparison in operand of &
util.c:1016: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_a':
util.c:1063: warning: suggest parentheses around comparison in operand of &
util.c:1071: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_lxi':
util.c:856: warning: 'J' might be used uninitialized in this function
util.c:856: warning: 'K' might be used uninitialized in this function
windres -I e:/biocbld/bbs-2.1-bioc/R/include  -i prism_res.rc -o prism_res.o
gcc  -shared -s  -o prism.dll prism.def bisegment.o find_grid.o util.o prism_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package prism for lazy loading
Loading required package: EBImage
Creating a new generic function for "summary" in "prism"
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'prism'
     Formats: text html latex example chm 
  extractExpression                 text    html    latex   example chm
  formImagePair                     text    html    latex   example chm
  getGrid                           text    html    latex   example chm
  like                              text    html    latex           chm
  plotEstimates                     text    html    latex   example chm
  prism                             text    html    latex   example chm
  prismEstimates-class              text    html    latex   example chm
  prismGrid-class                   text    html    latex   example chm
  prismImage-class                  text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\prism\chm\prism.chm





Compile time: 0 minutes, 0 seconds

10	Topics

53	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\prism\chm\prism.chm, 28,120 bytes

Compression decreased file by 15,231 bytes.

  adding MD5 sums

* DONE (prism)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'prism_0.1.1.tar.gz'