Package: externalVector

Version: 1.5.2

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=externalVector.buildbin-libdir externalVector_1.5.2.tar.gz

RetCode: 1

Time: 18.8 seconds

Status: ERROR

PackageFile: None

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/externalVector.buildbin-libdir

Using auto-selected zip options ' externalVector-HELP=ziponly'

---------- Making package externalVector ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making allocator.d from allocator.c
making arraySummary.d from arraySummary.c
making coerce.d from coerce.c
making externalVector.d from externalVector.c
making groups.d from groups.c
making math.d from math.c
making slice.d from slice.c
making storage.d from storage.c
making subscript.d from subscript.c
gcc   -IE:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c allocator.c -o allocator.o
allocator.c: In function `gcExternalPtr_new':
allocator.c:32: warning: passing arg 1 of `R_MakeExternalPtr' discards qualifiers from pointer target type
allocator.c:44: warning: passing arg 1 of `R_MakeExternalPtr' discards qualifiers from pointer target type
allocator.c: In function `gcExternalPtr_restore':
allocator.c:76: warning: passing arg 2 of `R_SetExternalPtrAddr' discards qualifiers from pointer target type
allocator.c: In function `gcExternalPtr_resizeInternal':
allocator.c:100: warning: passing arg 2 of `R_SetExternalPtrAddr' discards qualifiers from pointer target type
allocator.c:136: warning: passing arg 1 of `memcpy' discards qualifiers from pointer target type
allocator.c:141: warning: passing arg 2 of `R_SetExternalPtrAddr' discards qualifiers from pointer target type
gcc   -IE:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c arraySummary.c -o arraySummary.o
gcc   -IE:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c coerce.c -o coerce.o
coerce.c: In function `ComplexFromString':
coerce.c:213: warning: initialization discards qualifiers from pointer target type
gcc   -IE:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc   -IE:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c groups.c -o groups.o
gcc   -IE:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c math.c -o math.o
gcc   -IE:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c slice.c -o slice.o
gcc   -IE:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c storage.c -o storage.o
gcc   -IE:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c subscript.c -o subscript.o
windres -I E:/biocbld/bbs-2.1-bioc/R/include  -i externalVector_res.rc -o externalVector_res.o
gcc  -shared -s  -o externalVector.dll externalVector.def allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o externalVector_res.o  -LE:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  preparing package externalVector for lazy loading
Creating a new generic function for "match" in "externalVector"
Creating a new generic function for "as.vector" in "externalVector"
Creating a new generic function for "as.single" in "externalVector"
Creating a new generic function for "as.list" in "externalVector"
Creating a new generic function for "as.matrix" in "externalVector"
Creating a new generic function for "as.data.frame" in "externalVector"
Error in match.call(fmatch, fcall) : 
  unused argument(s) (base = "indirectExternalVector")
Error: unable to load R code in package 'externalVector'
Execution halted
make[2]: *** [lazyload] Error 1
make[1]: *** [all] Error 2
make: *** [pkg-externalVector] Error 2
*** Installation of externalVector failed ***

Removing 'E:/biocbld/bbs-2.1-bioc/meat/externalVector.buildbin-libdir/externalVector'