Back to the "Multiple platform build/check report"
| IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
| Package 16/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
annaffy1.9.1Colin A. SmithLast Changed Date: 2007-06-10 17:26:20 -0700 Last Changed Rev: 25308 | lamb1 | Linux (SUSE 10.1) | x86_64 | [ ERROR ] | skipped | |
| wellington | Linux (SUSE 9.2) | i686 | ERROR | skipped | ||
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | ERROR | skipped | skipped | |
| pitt | Mac OS X (10.4.10) | i386 | ERROR | skipped | skipped |
| Package: annaffy |
| Version: 1.9.1 |
| Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build annaffy |
| RetCode: 1 |
| Time: 7.5 seconds |
| Status: ERROR |
| PackageFile: None |
* checking for file 'annaffy/DESCRIPTION' ... OK
* preparing 'annaffy':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'annaffy' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GO
Loading required package: KEGG
** help
>>> Building/Updating help pages for package 'annaffy'
Formats: text html latex example
aaf.character text html latex
aaf.goterm text html latex
aaf.handler text html latex
aaf.integer text html latex
aaf.raw text html latex
aafChromLoc-class text html latex
aafChromLoc text html latex example
aafChromosome-class text html latex
aafChromosome text html latex example
aafCytoband-class text html latex
aafCytoband text html latex example
aafDescription-class text html latex
aafDescription text html latex example
aafExpr text html latex
aafFunction-class text html latex
aafFunction text html latex example
aafGO-class text html latex
aafGO text html latex example
aafGOItem-class text html latex
aafGenBank-class text html latex
aafGenBank text html latex example
aafIntensity-class text html latex
aafList-class text html latex
aafLocusLink-class text html latex
aafLocusLink text html latex example
aafPathway-class text html latex
aafPathway text html latex example
aafPathwayItem-class text html latex
aafProbe-class text html latex
aafProbe text html latex example
aafPubMed-class text html latex
aafPubMed text html latex example
aafSearchGO text html latex
aafSearchText text html latex example
aafSigned-class text html latex
aafSymbol-class text html latex
aafSymbol text html latex example
aafTable-class text html latex
aafTable text html latex
aafTableAnn text html latex
aafTableFrame text html latex
aafTableInt text html latex
aafUniGene-class text html latex
aafUniGene text html latex example
chkPkgs text html latex
getCSS-methods text html latex
getHTML-methods text html latex
getTD-methods text html latex
getText-methods text html latex
getURL-methods text html latex
is.annpkg text html latex example
selectorWidget text html latex
** building package indices ...
* DONE (annaffy)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GO
Loading required package: KEGG
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: hgu95av2.db
Error: processing vignette 'annaffy.Rnw' failed with diagnostics:
chunk 4
Error in sqliteExecStatement(con, statement, bind.data) :
RS-DBI driver: (error in statement: near ",": syntax error)
In addition: Warning message:
In if (!is.na(L2Rlink@tagname)) L2Rlink@tagname :
the condition has length > 1 and only the first element will be used
Execution halted