Package: DNAcopy

Version: 1.11.1

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build DNAcopy

RetCode: 0

Time: 30.3 seconds

Status: OK

PackageFile: DNAcopy_1.11.1.tar.gz

* checking for file 'DNAcopy/DESCRIPTION' ... OK
* preparing 'DNAcopy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst114859094


---------- Making package DNAcopy ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making flchoose.d from flchoose.c
making fphyper.d from fphyper.c
making fpnorm.d from fpnorm.c
making rshared.d from rshared.c
gcc   -Ie:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c flchoose.c -o flchoose.o
gcc   -Ie:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c fphyper.c -o fphyper.o
gcc   -Ie:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c fpnorm.c -o fpnorm.o
gcc   -Ie:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c rshared.c -o rshared.o
g77 -O3 -Wall   -c changepoints.f -o changepoints.o
changepoints.f: In subroutine `tmax1':
In file included from changepoints.f:0:
changepoints.f:175: warning: 'sxmxi' might be used uninitialized in this function
changepoints.f:175: warning: 'wtmxi' might be used uninitialized in this function
changepoints.f:175: warning: 'wtmxj' might be used uninitialized in this function
g77 -O3 -Wall   -c getbdry.f -o getbdry.o
getbdry.f: In subroutine `getbdry':
In file included from getbdry.f:0:
getbdry.f:6: warning: unused variable 'k'
getbdry.f:6: warning: unused variable 'i'
g77 -O3 -Wall   -c hybcpt.f -o hybcpt.o
g77 -O3 -Wall   -c prune.f -o prune.o
windres -I e:/biocbld/bbs-2.1-bioc/R/include  -i DNAcopy_res.rc -o DNAcopy_res.o
gcc  -shared -s  -o DNAcopy.dll DNAcopy.def flchoose.o fphyper.o fpnorm.o rshared.o changepoints.o getbdry.o hybcpt.o prune.o DNAcopy_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin   -lg2c -lR
  ... DLL made
  installing DLL
  installing R files
  installing demos
  installing inst files
  installing data files
  preparing package DNAcopy for lazy data loading
  installing man source files
  installing indices
  installing help
Note: unmatched right brace in 'segment' on or after line 60
Note: unmatched right brace in 'segment.Rd' on or after line 60
 >>> Building/Updating help pages for package 'DNAcopy'
     Formats: text html latex example chm 
  CNA                               text    html    latex   example chm
  DNAcopy-internal                  text    html    latex           chm
  DNAcopy                           text    html    latex           chm
  coriell                           text    html    latex           chm
  cytoBand                          text    html    latex           chm
  getbdry                           text    html    latex           chm
  plot.DNAcopy                      text    html    latex   example chm
  segment                           text    html    latex   example chm
  smooth.CNA                        text    html    latex   example chm
  subset.CNA                        text    html    latex   example chm
  subset.DNAcopy                    text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\DNAcopy\chm\DNAcopy.chm





Compile time: 0 minutes, 1 second

12	Topics

24	Local links

1	Internet link

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\DNAcopy\chm\DNAcopy.chm, 32,168 bytes

Compression decreased file by 9,549 bytes.

  adding MD5 sums

* DONE (DNAcopy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'DNAcopy_1.11.1.tar.gz'