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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1
Package 3/247HostnameOSArchBUILDCHECKBUILD BIN

ACME

1.3.2

Sean Davis
Last Changed Date: 2007-08-09 13:06:04 -0700
Last Changed Rev: 26266
lamb1 Linux (SUSE 10.1) x86_64  ERROR skipped
wellington Linux (SUSE 9.2) i686 [ ERROR ]skipped
liverpool Windows Server 2003 R2 (32-bit) x64  ERROR skippedskipped
pitt Mac OS X (10.4.10) i386  ERROR skippedskipped
Package: ACME
Version: 1.3.2
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build ACME
RetCode: 1
Time: 16.7 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'ACME/DESCRIPTION' ... OK
* preparing 'ACME':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'ACME' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c windowChisq.c -o windowChisq.o
windowChisq.c: In function `windowChisq':
windowChisq.c:58: warning: suggest parentheses around comparison in operand of &
windowChisq.c:63: warning: suggest parentheses around comparison in operand of &
windowChisq.c:21: warning: unused variable `xa'
windowChisq.c: At top level:
windowChisq.c:86: warning: initialization from incompatible pointer type
gcc -std=gnu99 -shared -L/usr/local/lib -o ACME.so windowChisq.o   -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'ACME'
     Formats: text html latex example 
  aGFF-class                        text    html    latex   example
  aGFFCalc-class                    text    html    latex   example
  do.aGFF.calc                      text    html    latex   example
  example.agff                      text    html    latex   example
  findClosestGene                   text    html    latex   example
  findRegions                       text    html    latex   example
  getRefflat                        text    html    latex   example
  read.resultsGFF                   text    html    latex   example
  write.sgr                         text    html    latex   example
** building package indices ...
* DONE (ACME)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "print" in "ACME"
Creating a new generic function for "plot" in "ACME"

Error: processing vignette 'ACME.Rnw' failed with diagnostics:
 chunk 3 
Error in function (classes, fdef, mtable)  : 
  unable to find an inherited method for function "Chromosome", for signature "aGFF"
Execution halted