Package: gff3Plotter

Version: 1.9.0

Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check gff3Plotter_1.9.0.tar.gz

RetCode: 0

Time: 15.5 seconds

Status: WARNINGS

CheckDir: gff3Plotter.Rcheck

Warnings: 2

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/gff3Plotter.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-05-03 r41426)
* checking for file 'gff3Plotter/DESCRIPTION' ... OK
* this is package 'gff3Plotter' version '1.9.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gff3Plotter' can be installed ... WARNING
Found the following significant warnings:
  Warning: unmatched brace ('}') in 'getTickCoords.Rd' on or after line 19
  Warning: unmatched brace ('}') in 'getTickCoords.Rd' on or after line 19
  Warning: unmatched brace ('}') in 'getTickCoords.Rd' on or after line 19
  Warning: unmatched brace ('}') in 'getTickCoords.Rd' on or after line 19
  Warning: unmatched brace ('}') in 'plot.gff.Rd' on or after line 34
  Warning: unmatched brace ('}') in 'plot.gff.Rd' on or after line 34
  Warning: unmatched brace ('}') in 'plot.gff.Rd' on or after line 34
  Warning: unmatched brace ('}') in 'plot.gff.Rd' on or after line 34
  Warning: unmatched brace ('}') in 'plot.gff.toFile.Rd' on or after line 25
  Warning: unmatched brace ('}') in 'plot.gff.toFile.Rd' on or after line 25
  Warning: unmatched brace ('}') in 'plot.gff.toFile.Rd' on or after line 25
  Warning: unmatched brace ('}') in 'plot.gff.toFile.Rd' on or after line 25
See '/home/biocbuild/bbs-2.1-bioc/meat/gff3Plotter.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  GDD
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plot.gff.toFile: no visible global function definition for 'GDD'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating gff3Plotter-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating gff3Plotter-manual.tex ... OK
* checking gff3Plotter-manual.tex ... OK

WARNING: There were 2 warnings, see
  /home/biocbuild/bbs-2.1-bioc/meat/gff3Plotter.Rcheck/00check.log
for details

* Installing *source* package 'gff3Plotter' ...
** R
** inst
** preparing package for lazy loading
** help
Warning: unmatched brace ('}') in 'getTickCoords.Rd' on or after line 19
Warning: unmatched brace ('}') in 'getTickCoords.Rd' on or after line 19
Warning: unmatched brace ('}') in 'getTickCoords.Rd' on or after line 19
Warning: unmatched brace ('}') in 'getTickCoords.Rd' on or after line 19
Warning: unmatched brace ('}') in 'plot.gff.Rd' on or after line 34
Warning: unmatched brace ('}') in 'plot.gff.Rd' on or after line 34
Warning: unmatched brace ('}') in 'plot.gff.Rd' on or after line 34
Warning: unmatched brace ('}') in 'plot.gff.Rd' on or after line 34
Warning: unmatched brace ('}') in 'plot.gff.toFile.Rd' on or after line 25
Warning: unmatched brace ('}') in 'plot.gff.toFile.Rd' on or after line 25
Warning: unmatched brace ('}') in 'plot.gff.toFile.Rd' on or after line 25
Warning: unmatched brace ('}') in 'plot.gff.toFile.Rd' on or after line 25
 >>> Building/Updating help pages for package 'gff3Plotter'
     Formats: text html latex example 
  getAttr                           text    html    latex   example
  getTickCoords                     text    html    latex   example
  internals                         text    html    latex
  plot.gff                          text    html    latex   example
  plot.gff.toFile                   text    html    latex   example
  read.gff                          text    html    latex   example
** building package indices ...
* DONE (gff3Plotter)