Package: beadarraySNP

Version: 1.3.3

Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build beadarraySNP

RetCode: 0

Time: 22.5 seconds

Status: OK

PackageFile: beadarraySNP_1.3.3.tar.gz

* checking for file 'beadarraySNP/DESCRIPTION' ... OK
* preparing 'beadarraySNP':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'beadarraySNP' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: tools
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: quantsmooth
Loading required package: quantreg
Loading required package: SparseM
Package SparseM (0.72) loaded.  To cite, see citation("SparseM")
Loading required package: lodplot
Loading required package: grid
** help
Warning: unmatched brace ('}') in 'backgroundEstimate.Rd' on or after line 50
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Warning: unmatched brace ('}') in 'class.SnpSetIllumina.Rd' on or after line 133
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Warning: unmatched brace ('}') in 'class.SnpSetIllumina.Rd' on or after line 133
Warning: unmatched brace ('}') in 'heterozygousSNPs.Rd' on or after line 57
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Warning: unmatched brace ('}') in 'read.SnpSetIllumina.Rd' on or after line 80
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Warning: unmatched brace ('}') in 'smoothed.intensity.Rd' on or after line 21
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 >>> Building/Updating help pages for package 'beadarraySNP'
     Formats: text html latex example 
  CopynumberConversion              text    html    latex   example
  Datasets                          text    html    latex
  GenomicReports                    text    html    latex   example
  PolarTransforms                   text    html    latex   example
  QCIllumina-class                  text    html    latex
  arrayType                         text    html    latex
  backgroundCorrect.SNP             text    html    latex   example
  backgroundEstimate                text    html    latex   example
  calculateLOH                      text    html    latex   example
  calculateQCarray                  text    html    latex   example
  class.SnpSetIllumina              text    html    latex
  compareGenotypes                  text    html    latex   example
  heterozygosity                    text    html    latex   example
  heterozygousSNPs                  text    html    latex   example
  normalizeBetweenAlleles.SNP       text    html    latex   example
  normalizeLoci.SNP                 text    html    latex   example
  normalizeWithinArrays.SNP         text    html    latex   example
  pdfChromosomesSmoothCopyNumber    text    html    latex   example
  pdfQC                             text    html    latex
  plotQC                            text    html    latex   example
  read.SnpSetIllumina               text    html    latex   example
  removeLowQualityProbes            text    html    latex
  removeLowQualitySamples           text    html    latex   example
  renameOPA                         text    html    latex   example
  reportSamplePanelQC-methods       text    html    latex   example
  smoothed.intensity                text    html    latex   example
  standardNormalization             text    html    latex   example
** building package indices ...
* DONE (beadarraySNP)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'beadarraySNP_1.3.3.tar.gz'