Package: maDB

Version: 1.9.0

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check maDB_1.9.0.tar.gz

RetCode: 0

Time: 80.5 seconds

Status: OK

CheckDir: maDB.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/maDB.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-04-17 r41210)
* checking for file 'maDB/DESCRIPTION' ... OK
* this is package 'maDB' version '1.9.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maDB' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating maDB-Ex.R ... OK
* checking examples ... OK
* creating maDB-manual.tex ... OK
* checking maDB-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/maDB.Rcheck


---------- Making package maDB ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'maDB'
     Formats: text html latex example chm 
  EexprSet-class                    text    html    latex   example chm
  Layout-class                      text    html    latex   example chm
  MAtoG                             text    html    latex   example chm
  MAtoR                             text    html    latex   example chm
  Sample-class                      text    html    latex   example chm
  SignalChannel-class               text    html    latex   example chm
  Similarity-class                  text    html    latex           chm
  arrowProgress                     text    html    latex   example chm
  average                           text    html    latex           chm
  calculateSimilarity               text    html    latex   example chm
  checkForAnnotation                text    html    latex   example chm
  createDirs                        text    html    latex   example chm
  createEexprSetFromLimma           text    html    latex   example chm
  createFile                        text    html    latex   example chm
  createJOINQuery                   text    html    latex   example chm
  createSampleFromTable             text    html    latex   example chm
  dbCalculateRegulations            text    html    latex           chm
  dbGetComparisons                  text    html    latex           chm
  dbGetGeneRegulationRanking        text    html    latex           chm
  dbSearchSimilarPattern            text    html    latex   example chm
  deleteExperimentFromDB            text    html    latex           chm
  distance.euclidian                text    html    latex   example chm
  distance.pearson                  text    html    latex   example chm
  distance.pearson.uncentered       text    html    latex   example chm
  distance.spearman                 text    html    latex   example chm
  drawMAPlot                        text    html    latex           chm
  drawVolcanoPlot                   text    html    latex           chm
  format.latex                      text    html    latex   example chm
  getAnnotation                     text    html    latex           chm
  getDBAnnotation                   text    html    latex           chm
  getExpValue                       text    html    latex           chm
  getExperimentDBInfo               text    html    latex           chm
  getMDB                            text    html    latex           chm
  getPK                             text    html    latex   example chm
  getPathFromFile                   text    html    latex   example chm
  getSamplesFromDB                  text    html    latex           chm
  isDecimal                         text    html    latex   example chm
  loadFromDB                        text    html    latex           chm
  mapply                            text    html    latex   example chm
  mean.center                       text    html    latex   example chm
  meanWithoutNA                     text    html    latex   example chm
  medianWithoutNA                   text    html    latex   example chm
  multiGrep                         text    html    latex   example chm
  myGrep                            text    html    latex   example chm
  plotSimilarity                    text    html    latex           chm
  progress                          text    html    latex   example chm
  publishToDB                       text    html    latex   example chm
  replaceAll                        text    html    latex   example chm
  replaces                          text    html    latex   example chm
  smallALL                          text    html    latex           chm
  toEexprSet                        text    html    latex           chm
  updateDBAnnotation                text    html    latex           chm
  writeFigure                       text    html    latex   example chm
  writeLatexTable                   text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\maDB.Rcheck\00_pkg_src\maDB\chm\maDB.chm


Compile time: 0 minutes, 0 seconds
55	Topics
256	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\maDB.Rcheck\00_pkg_src\maDB\chm\maDB.chm, 78,193 bytes
Compression decreased file by 114,616 bytes.
  preparing package maDB for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: limma
Creating a new generic function for "sort" in "maDB"
  adding MD5 sums

* DONE (maDB)