Package: genefilter

Version: 1.15.3

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check genefilter_1.15.3.tar.gz

RetCode: 0

Time: 134.9 seconds

Status: OK

CheckDir: genefilter.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/genefilter.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-04-17 r41210)
* checking for file 'genefilter/DESCRIPTION' ... OK
* this is package 'genefilter' version '1.15.3'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'genefilter' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating genefilter-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating genefilter-manual.tex ... OK
* checking genefilter-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/genefilter.Rcheck


---------- Making package genefilter ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making init.d from init.c
making nd.d from nd.c
making pAUC.d from pAUC.c
making rowPAUCs.d from rowPAUCs.c
making rowttests.d from rowttests.c
making half_range_mode.d from half_range_mode.cpp
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c init.c -o init.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c nd.c -o nd.o
nd.c: In function `gf_dist_binary':
nd.c:242: warning: unused variable `w1'
nd.c:242: warning: unused variable `w2'
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c pAUC.c -o pAUC.o
pAUC.c: In function `pAUC_c':
pAUC.c:75: warning: operation on `ta' may be undefined
pAUC.c:78: warning: operation on `ta' may be undefined
pAUC.c:81: warning: operation on `ta' may be undefined
pAUC.c: In function `pAUC':
pAUC.c:141: warning: suggest parentheses around comparison in operand of |
pAUC.c:123: warning: unused variable `i'
pAUC.c: In function `pAUC_c':
pAUC.c:22: warning: 'xsum' might be used uninitialized in this function
pAUC.c:22: warning: 'ysum' might be used uninitialized in this function
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c rowPAUCs.c -o rowPAUCs.o
rowPAUCs.c: In function `ROCpAUC_c':
rowPAUCs.c:95: warning: operation on `ta' may be undefined
rowPAUCs.c:98: warning: operation on `ta' may be undefined
rowPAUCs.c:101: warning: operation on `ta' may be undefined
rowPAUCs.c:23: warning: 'xsum' might be used uninitialized in this function
rowPAUCs.c:23: warning: 'ysum' might be used uninitialized in this function
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c rowttests.c -o rowttests.o
g77 -O3 -Wall   -c ttest.f -o ttest.o
g++   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O2   -c half_range_mode.cpp -o half_range_mode.o
windres -I d:/biocbld/bbs-2.1-bioc/R/include  -i genefilter_res.rc -o genefilter_res.o
g++  -shared -s  -o genefilter.dll genefilter.def init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o half_range_mode.o genefilter_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin   -lg2c -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Creating a new generic function for "plot" in "genefilter"
  installing inst files
  installing data files
  preparing package genefilter for lazy data loading
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'genefilter'
     Formats: text html latex example chm 
  Anova                             text    html    latex   example chm
  allNA                             text    html    latex   example chm
  coxfilter                         text    html    latex   example chm
  cv                                text    html    latex   example chm
  eSetFilter                        text    html    latex   example chm
  filterfun                         text    html    latex   example chm
  findLargest                       text    html    latex   example chm
  gapFilter                         text    html    latex   example chm
  genefilter                        text    html    latex   example chm
  genefinder                        text    html    latex   example chm
  genescale                         text    html    latex   example chm
  half.range.mode                   text    html    latex   example chm
  kOverA                            text    html    latex   example chm
  maxA                              text    html    latex   example chm
  nsFilter                          text    html    latex   example chm
  pOverA                            text    html    latex   example chm
  rowFtests                         text    html    latex   example chm
  rowROC-class                      text    html    latex   example chm
  rowSds                            text    html    latex   example chm
  rowpAUCs                          text    html    latex   example chm
  shorth                            text    html    latex   example chm
  tdata                             text    html    latex   example chm
  ttest                             text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\genefilter.Rcheck\00_pkg_src\genefilter\chm\genefilter.chm


Compile time: 0 minutes, 0 seconds
24	Topics
122	Local links
2	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\genefilter.Rcheck\00_pkg_src\genefilter\chm\genefilter.chm, 54,097 bytes
Compression decreased file by 50,189 bytes.
  adding MD5 sums

* DONE (genefilter)