Package: arji

Version: 0.3.15

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build arji

RetCode: 1

Time: 10.1 seconds

Status: ERROR

PackageFile: None

* checking for file 'arji/DESCRIPTION' ... OK
* preparing 'arji':
* checking DESCRIPTION meta-information ... OK
* cleaning src
Makefile:1: Makevars: No such file or directory
make: *** No rule to make target `Makevars'.  Stop.
* installing the package to re-build vignettes
* Installing *source* package 'arji' ...
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - 
/bin/javac ../inst/java/*.java
/loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD SHLIB arji.c
make[1]: Entering directory `/loc/biocbuild/bbs-2.1-bioc/meat/arji/src'
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/jdk/instances/jdk1.5.0/jre/include -I/usr/jdk/instances/jdk1.5.0/jre/include/linux  -I/usr/local/include    -fPIC  -g -O2 -Wall -c arji.c -o arji.o
In file included from arji.c:7:
/usr/local/include/jni.h:17:31: error: gcj/libgcj-config.h: No such file or directory
arji.c: In function 'arji_destroyJavaVM':
arji.c:144: warning: unused variable 'kill'
arji.c: In function 'arji_getJavaClass':
arji.c:168: warning: dereferencing type-punned pointer will break strict-aliasing rules
arji.c:163: warning: unused variable 'jstr'
arji.c:162: warning: unused variable 'args'
arji.c:161: warning: unused variable 'stringClass'
arji.c:160: warning: unused variable 'mid'
arji.c: In function 'arji_getJavaStaticMethodID':
arji.c:194: warning: dereferencing type-punned pointer will break strict-aliasing rules
arji.c: In function 'arji_getJavaNonstaticMethodID':
arji.c:223: warning: dereferencing type-punned pointer will break strict-aliasing rules
arji.c: In function 'arji_getJavaStaticFieldID':
arji.c:252: warning: dereferencing type-punned pointer will break strict-aliasing rules
arji.c: In function 'arji_getJavaFieldID':
arji.c:287: warning: dereferencing type-punned pointer will break strict-aliasing rules
arji.c: In function 'arji_createJVM':
arji.c:328: warning: dereferencing type-punned pointer will break strict-aliasing rules
arji.c:316: warning: unused variable 'outenv'
arji.c:316: warning: unused variable 'JVMRef'
arji.c:316: warning: unused variable 'JNIenvRef'
arji.c: In function 'arji_callJNIArgable':
arji.c:388: warning: dereferencing type-punned pointer will break strict-aliasing rules
arji.c:618: warning: format '%x' expects type 'unsigned int', but argument 2 has type 'jobject'
arji.c:619: warning: format '%x' expects type 'unsigned int', but argument 2 has type 'void **'
arji.c: In function 'arji_getJavaStaticField':
arji.c:680: warning: dereferencing type-punned pointer will break strict-aliasing rules
arji.c: In function 'arji_getJavaField':
arji.c:849: warning: dereferencing type-punned pointer will break strict-aliasing rules
arji.c:840: warning: unused variable 'cls'
arji.c: In function 'convertJavaString':
arji.c:1023: warning: dereferencing type-punned pointer will break strict-aliasing rules
arji.c:1014: warning: unused variable 'result'
arji.c:1013: warning: unused variable 'mid'
arji.c:1012: warning: unused variable 'cls'
arji.c: In function 'convertJavaObject':
arji.c:1057: warning: format '%x' expects type 'unsigned int', but argument 2 has type 'void **'
arji.c:1065: warning: control reaches end of non-void function
arji.c: In function 'arji_getJavaField':
arji.c:1003: warning: control reaches end of non-void function
arji.c: In function 'arji_getJavaStaticField':
arji.c:834: warning: control reaches end of non-void function
make[1]: *** [arji.o] Error 1
make[1]: Leaving directory `/loc/biocbuild/bbs-2.1-bioc/meat/arji/src'
make: *** [arji.so] Error 2
ERROR: compilation failed for package 'arji'
** Removing '/tmp/Rinst190969746/arji'
 ERROR
Installation failed.
Removing '/tmp/Rinst190969746'