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| Package 17/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
annotate1.15.0Biocore TeamLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
| wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
| churchill | Solaris 2.9 | sparc | [ ERROR ] | skipped | ||
| lemming | Windows Server 2003 (32-bit) | x64 | OK | OK | OK |
| Package: annotate |
| Version: 1.15.0 |
| Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build annotate |
| RetCode: 1 |
| Time: 351.3 seconds |
| Status: ERROR |
| PackageFile: None |
* checking for file 'annotate/DESCRIPTION' ... OK
* preparing 'annotate':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'annotate' ...
** R
** data
** inst
** save image
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
>>> Building/Updating help pages for package 'annotate'
Formats: text html latex example
ACCNUMStats text html latex example
GO2heatmap text html latex example
GOTerms-class text html latex example
GOmnplot text html latex example
HTMLPage-class text html latex example
LL2homology text html latex example
PMIDAmat text html latex example
PWAmat text html latex example
UniGeneQuery text html latex example
accessionToUID text html latex example
annPkgName text html latex example
aqListGOIDs text html latex example
buildChromLocation text html latex example
buildPubMedAbst text html latex example
chrCats text html latex example
chromLocation-class text html latex example
compatibleVersions text html latex example
dropECode text html latex example
filterGOByOntology text html latex example
findNeighbors text html latex example
genbank text html latex example
genelocator text html latex example
getAnnMap text html latex example
getEvidence text html latex example
getGOTerm text html latex example
getOntology text html latex example
getPMInfo text html latex example
getSYMBOL text html latex example
getSeq4Acc text html latex example
getTDRows text html latex
hasGOannote text html latex example
hgByChroms text html latex example
hgCLengths text html latex example
hgu95AProbLocs text html latex
hgu95Achroloc text html latex example
hgu95Achrom text html latex example
hgu95All text html latex example
hgu95Asym text html latex example
homoData-class text html latex example
htmlpage text html latex example
installDataPackage text html latex example
locuslinkById text html latex example
locuslinkQuery text html latex example
makeAnchor text html latex example
neighborGeneFinder text html latex example
p2LL text html latex example
pm.abstGrep text html latex example
pm.getabst text html latex example
pm.titles text html latex example
pmAbst2HTML text html latex example
pmid2MIAME text html latex example
pmidQuery text html latex example
probesByLL text html latex example
pubMedAbst-class text html latex example
pubmed text html latex example
readGEOAnn text html latex example
serializeEnv text html latex example
usedChromGenes text html latex example
** building package indices ...
* DONE (annotate)
* creating vignettes ... ERROR
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: graph
Attaching package: 'Rgraphviz'
The following object(s) are masked from package:annotate :
toFile
Loading required package: XML
Error: processing vignette 'query.Rnw' failed with diagnostics:
chunk 3 (label=getabsts)
Error in .handleXML(query) : Sorry, you need the XML package!
In addition: Warning message:
there is no package called 'XML' in: library(package, lib.loc = lib.loc, character.only = TRUE, logical = TRUE,
Execution halted