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Package 204/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
ScISI1.9.2Tony ChiangLast Changed Date: 2007-05-03 09:20:55 -0700 Last Changed Rev: 24484 | lamb1 | Linux (SUSE 10.1) | x86_64 | ERROR | skipped | |
wellington | Linux (SUSE 9.2) | i686 | ERROR | skipped | ||
churchill | Solaris 2.9 | sparc | [ ERROR ] | skipped | ||
lemming | Windows Server 2003 (32-bit) | x64 | ERROR | skipped | skipped |
Package: ScISI |
Version: 1.9.2 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build ScISI |
RetCode: 1 |
Time: 119.8 seconds |
Status: ERROR |
PackageFile: None |
* checking for file 'ScISI/DESCRIPTION' ... OK * preparing 'ScISI': * checking DESCRIPTION meta-information ... OK * installing the package to re-build vignettes * Installing *source* package 'ScISI' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: apComplex Loading required package: graph Loading required package: RBGL Loading required package: GO Loading required package: GOstats Loading required package: annotate Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: Category Loading required package: KEGG Loading required package: genefilter Loading required package: survival Loading required package: splines Loading required package: Matrix Loading required package: lattice Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Loading required package: Rgraphviz Attaching package: 'Rgraphviz' The following object(s) are masked from package:annotate : toFile Loading required package: YEAST Loading required package: xtable ** help >>> Building/Updating help pages for package 'ScISI' Formats: text html latex example Desc-methods text html latex ID-methods text html latex JaccardCoef text html latex example ScISI text html latex example ScISI2html text html latex example arp23 text html latex example arp23G text html latex example arp23Orf text html latex example arp23Y2HG text html latex example calcGraphStats text html latex example cfia text html latex example cfiaOrf text html latex example checkComplex text html latex example checkSGN text html latex example compBijection text html latex example compareComplex text html latex example createGODataFrame text html latex example createGOMatrix text html latex example createMipsDataFrame text html latex example createMipsMatrix text html latex example createYeastDataObj text html latex example dataS text html latex example eAt text html latex example eAt2 text html latex example edgeProp text html latex example egEBI16112 text html latex example expStats text html latex example findSubComp text html latex example gavin2mergeMG text html latex example getAPMSData text html latex example getGOInfo text html latex example getLocOrfs text html latex example getMipsInfo text html latex example getURL-methods text html latex graphSumStats text html latex example ho2mergeMGG text html latex example krogan2mergeMGGH text html latex example list2Matrix text html latex example locScISI text html latex example mapping2SysG text html latex example mappingsG text html latex example maximizeSimilarity text html latex example meanDeg text html latex example mergeBGMat text html latex example mips2go text html latex example nAt text html latex nAtMap text html latex example nucComp text html latex example recCompSize text html latex example redundantM text html latex example rmByEvi text html latex example runAlignment text html latex example runCompareComplex text html latex example subCompM text html latex example sumStats text html latex example unWantedComp text html latex example xtraGO text html latex example xtraGONodes text html latex example yeastData-class text html latex example ** building package indices ... * DONE (ScISI) * creating vignettes ... ERROR Loading required package: apComplex Loading required package: graph Loading required package: RBGL Loading required package: GO Loading required package: GOstats Loading required package: annotate Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: Category Loading required package: KEGG Loading required package: genefilter Loading required package: survival Loading required package: splines Loading required package: Matrix Loading required package: lattice Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Loading required package: Rgraphviz Attaching package: 'Rgraphviz' The following object(s) are masked from package:annotate : toFile Loading required package: YEAST Loading required package: xtable Loading required package: ppiData Error: processing vignette 'vignette.Rnw' failed with diagnostics: chunk 2 (label=getGOInfo) Error in readChar(con, 5) : cannot open the connection In addition: Warning messages: 1: data set 'y2hGW' not found in: data(y2hGW) 2: cannot open compressed file '' Execution halted