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Package 214/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
SNPchip1.1.0Robert ScharpfLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | OK | [ OK ] | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | OK | OK |
Package: SNPchip |
Version: 1.1.0 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check SNPchip_1.1.0.tar.gz |
RetCode: 0 |
Time: 354.8 seconds |
Status: OK |
CheckDir: SNPchip.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/loc/biocbuild/bbs-2.1-bioc/meat/SNPchip.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-04-17 r41210) * checking for file 'SNPchip/DESCRIPTION' ... OK * this is package 'SNPchip' version '1.1.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'SNPchip' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating SNPchip-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating SNPchip-manual.tex ... OK * checking SNPchip-manual.tex ... OK
SNPchip.Rcheck/00install.out:
* Installing *source* package 'SNPchip' ... ** R ** data ** inst ** save image Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: geneplotter Loading required package: annotate Loading required package: lattice KernSmooth 2.22 installed Copyright M. P. Wand 1997 Loading required package: oligo Loading required package: affyio Loading required package: splines Loading required package: RSQLite Loading required package: DBI Loading required package: BufferedMatrix Loading required package: BufferedMatrixMethods This is the oligo package ** help >>> Building/Updating help pages for package 'SNPchip' Formats: text html latex example AnnotatedSnpCallSet-class text html latex example AnnotatedSnpCopyNumberSet-class text html latex example AnnotatedSnpSet-class text html latex example addFeatureData-method text html latex alleleA text html latex example alleleB text html latex example annSnpset text html latex example centromere text html latex example chromosome text html latex chromosomeAnnotation text html latex example chromosomeSize text html latex example coerce-methods text html latex copyNumber text html latex cytoband text html latex example dbSnpId text html latex example enzyme text html latex example fData text html latex example fragmentLength text html latex example getSnpAnnotation text html latex example hapmap text html latex example initialize-methods text html latex plotCytoband text html latex example plotSnp text html latex example position text html latex show-methods text html latex showSummary text html latex example smoothSnp text html latex example summary-methods text html latex unsplitS4 text html latex example ** building package indices ... * DONE (SNPchip)