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SAGElyzer

1.15.0

Jianhua Zhang
Last Changed Date: 2007-04-24 11:31:42 -0700
Last Changed Rev: 24217
lamb1 Linux (SUSE 10.1) x86_64  OK  WARNINGS 
wellington Linux (SUSE 9.2) i686  OK  WARNINGS 
churchill Solaris 2.9 sparc  ERROR skipped
lemming Windows Server 2003 (32-bit) x64  OK [ ERROR ] OK 
Package: SAGElyzer
Version: 1.15.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check SAGElyzer_1.15.0.tar.gz
RetCode: 1
Time: 26.5 seconds
Status: ERROR
CheckDir: SAGElyzer.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/SAGElyzer.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-04-17 r41210)
* checking for file 'SAGElyzer/DESCRIPTION' ... OK
* this is package 'SAGElyzer' version '1.15.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SAGElyzer' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... ERROR
Loading required package: AnnBuilder
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: XML
Loading required package: annotate
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: DynDoc
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: RODBC
Error in fun(...) : package RODBC unavailable
In addition: Warning message:
there is no package called 'RODBC' in: library(package, lib.loc = lib.loc, character.only = TRUE, logical = TRUE,  
Error : .onLoad failed in 'loadNamespace' for 'SAGElyzer'
Error: package/namespace load failed for 'SAGElyzer'
Execution halted

It looks like this package has a loading problem: see the messages for
details.

SAGElyzer.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/SAGElyzer.Rcheck


---------- Making package SAGElyzer ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing exec files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'SAGElyzer'
     Formats: text html latex example chm 
  SAGELyzer                         text    html    latex   example chm
  SAGEMapper                        text    html    latex   example chm
  SAGEToolTips                      text    html    latex   example chm
  SAGEWidget                        text    html    latex   example chm
  con4Win                           text    html    latex   example chm
  getGEOSAGE                        text    html    latex   example chm
  getNormFactor                     text    html    latex   example chm
  getTargetRow                      text    html    latex   example chm
  mergeSAGE                         text    html    latex   example chm
  mergeSAGEWidget                   text    html    latex   example chm
  querySAGE                         text    html    latex   example chm
  support                           text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\SAGElyzer.Rcheck\00_pkg_src\SAGElyzer\chm\SAGElyzer.chm


Compile time: 0 minutes, 0 seconds
13	Topics
144	Local links
5	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\SAGElyzer.Rcheck\00_pkg_src\SAGElyzer\chm\SAGElyzer.chm, 38,592 bytes
Compression decreased file by 36,790 bytes.
  preparing package SAGElyzer for lazy loading
Loading required package: AnnBuilder
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: XML
Loading required package: annotate
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: DynDoc
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
  adding MD5 sums

* DONE (SAGElyzer)