Package: OrderedList

Version: 1.9.0

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build OrderedList

RetCode: 1

Time: 20.5 seconds

Status: ERROR

PackageFile: None

* checking for file 'OrderedList/DESCRIPTION' ... OK
* preparing 'OrderedList':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst446477847


---------- Making package OrderedList ------------
  adding build stamp to DESCRIPTION
  installing R files
  save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: twilight
Loading required package: splines
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'OrderedList'
     Formats: text html latex example chm 
  OL.data                           text    html    latex           chm
  OL.result                         text    html    latex   example chm
  OrderedList                       text    html    latex   example chm
  check.test.args                   text    html    latex           chm
  compareLists                      text    html    latex   example chm
  getOverlap                        text    html    latex   example chm
  overlap                           text    html    latex           chm
  plot.OrderedList                  text    html    latex   example chm
  prepareData                       text    html    latex   example chm
  preparePermutations               text    html    latex           chm
  print.OrderedList                 text    html    latex   example chm
  scoreOrderComparison              text    html    latex           chm
  scoreRankings                     text    html    latex           chm
  shuffledRandomScores              text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\OrderedList\chm\OrderedList.chm





Compile time: 0 minutes, 0 seconds

15	Topics

55	Local links

0	Internet links

1	Graphic





Created d:\biocbld\bbs-2.1-bioc\meat\OrderedList\chm\OrderedList.chm, 40,088 bytes

Compression decreased file by 22,707 bytes.

  adding MD5 sums

* DONE (OrderedList)
* creating vignettes ... ERROR

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: splines

Error: processing vignette 'tr_2006_01.Rnw' failed with diagnostics:
 chunk 4 
Error in check.test.args(m, cl, paired) : Groups must have same size in paired test, recieved 8 1 samples and 13 0 samples instead
In addition: There were 50 or more warnings (use warnings() to see the first 50)
Execution halted