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| Package 85/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
GeneticsPed1.1.0Gregor GorjancLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
| wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
| churchill | Solaris 2.9 | sparc | OK | OK | ||
| lemming | Windows Server 2003 (32-bit) | x64 | OK | [ OK ] | OK |
| Package: GeneticsPed |
| Version: 1.1.0 |
| Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check GeneticsPed_1.1.0.tar.gz |
| RetCode: 0 |
| Time: 63.4 seconds |
| Status: OK |
| CheckDir: GeneticsPed.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory 'D:/biocbld/bbs-2.1-bioc/meat/GeneticsPed.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-04-17 r41210) * checking for file 'GeneticsPed/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'GeneticsPed' version '1.1.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'GeneticsPed' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable use of $BLAS_LIBS ... OK * creating GeneticsPed-Ex.R ... OK * checking examples ... OK * checking tests ... make[1]: Entering directory `/cygdrive/d/biocbld/bbs-2.1-bioc/meat/GeneticsPed.Rcheck/tests' Running 'doRUnit.R' make[1]: Leaving directory `/cygdrive/d/biocbld/bbs-2.1-bioc/meat/GeneticsPed.Rcheck/tests' OK * checking package vignettes in 'inst/doc' ... OK * creating GeneticsPed-manual.tex ... OK * checking GeneticsPed-manual.tex ... OK
GeneticsPed.Rcheck/00install.out:
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/GeneticsPed.Rcheck
---------- Making package GeneticsPed ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making sargolzaei.d from sargolzaei.c
making ainverse.d from ainverse.cc
making eibd.d from eibd.cc
making inbreed.d from inbreed.cc
making inverseAdditive.d from inverseAdditive.cc
making meuwissen.d from meuwissen.cc
making pedSort.d from pedSort.cc
making pedtemplate.d from pedtemplate.cc
making register.d from register.cc
making sortped.d from sortped.cc
gcc -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c sargolzaei.c -o sargolzaei.o
sargolzaei.c: In function `sargolzaei':
sargolzaei.c:62: warning: statement with no effect
sargolzaei.c:19: warning: 'S' might be used uninitialized in this function
sargolzaei.c:19: warning: 'MIP' might be used uninitialized in this function
sargolzaei.c:19: warning: 'N' might be used uninitialized in this function
g77 -O3 -Wall -c ggmatmult.f -o ggmatmult.o
g77 -O3 -Wall -c gpi.f -o gpi.o
g++ -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c ainverse.cc -o ainverse.o
g++ -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c eibd.cc -o eibd.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_tree.h: In member function `typename std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_Link_type std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_copy(const std::_Rb_tree_node<_Val>*, std::_Rb_tree_node<_Val>*) [with _Key = unsigned int, _Val = std::pair<const unsigned int, EIBDMember>, _KeyOfValue = std::_Select1st<std::pair<const unsigned int, EIBDMember> >, _Compare = std::less<unsigned int>, _Alloc = std::allocator<std::pair<const unsigned int, EIBDMember> >]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_tree.h:1029: warning: '__top' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_tree.h:365: warning: '__tmp' might be used uninitialized in this function
g++ -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c inbreed.cc -o inbreed.o
g++ -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c inverseAdditive.cc -o inverseAdditive.o
g++ -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c meuwissen.cc -o meuwissen.o
g++ -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c pedSort.cc -o pedSort.o
g++ -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c pedtemplate.cc -o pedtemplate.o
g++ -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c register.cc -o register.o
g++ -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c sortped.cc -o sortped.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = std::string, _Alloc = std::allocator<std::string>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
windres -I d:/biocbld/bbs-2.1-bioc/R/include -i GeneticsPed_res.rc -o GeneticsPed_res.o
g++ -shared -s -o GeneticsPed.dll GeneticsPed.def sargolzaei.o ggmatmult.o gpi.o ainverse.o eibd.o inbreed.o inverseAdditive.o meuwissen.o pedSort.o pedtemplate.o register.o sortped.o GeneticsPed_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lg2c -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'GeneticsPed'
Formats: text html latex example chm
Mrode text html latex example chm
TDT text html latex example chm
check text html latex example chm
codeUnit text html latex example chm
extend text html latex example chm
family text html latex example chm
founder text html latex example chm
geneContribution text html latex example chm
generatePedigree text html latex example chm
generation text html latex example chm
gpi text html latex example chm
inbreeding text html latex example chm
model.matrix text html latex example chm
nIndividual text html latex example chm
pedigree text html latex example chm
relationshipAdditive text html latex example chm
removeIndividual text html latex example chm
sort.pedigree text html latex example chm
summary.pedigree text html latex example chm
undocumented text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\GeneticsPed.Rcheck\00_pkg_src\GeneticsPed\chm\GeneticsPed.chm
Compile time: 0 minutes, 0 seconds
21 Topics
91 Local links
12 Internet links
1 Graphic
Created d:\biocbld\bbs-2.1-bioc\meat\GeneticsPed.Rcheck\00_pkg_src\GeneticsPed\chm\GeneticsPed.chm, 51,304 bytes
Compression decreased file by 40,440 bytes.
preparing package GeneticsPed for lazy loading
Loading required package: gdata
Loading required package: MASS
adding MD5 sums
* DONE (GeneticsPed)