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Package 58/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
DNAcopy1.11.0E. S. VenkatramanLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | OK | OK | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | [ OK ] | OK |
Package: DNAcopy |
Version: 1.11.0 |
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check DNAcopy_1.11.0.tar.gz |
RetCode: 0 |
Time: 72.5 seconds |
Status: OK |
CheckDir: DNAcopy.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'D:/biocbld/bbs-2.1-bioc/meat/DNAcopy.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-04-17 r41210) * checking for file 'DNAcopy/DESCRIPTION' ... OK * this is package 'DNAcopy' version '1.11.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'DNAcopy' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable use of $BLAS_LIBS ... OK * creating DNAcopy-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating DNAcopy-manual.tex ... OK * checking DNAcopy-manual.tex ... OK
DNAcopy.Rcheck/00install.out:
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/DNAcopy.Rcheck ---------- Making package DNAcopy ------------ adding build stamp to DESCRIPTION making DLL ... making flchoose.d from flchoose.c making fphyper.d from fphyper.c making fpnorm.d from fpnorm.c making rshared.d from rshared.c gcc -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c flchoose.c -o flchoose.o gcc -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c fphyper.c -o fphyper.o gcc -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c fpnorm.c -o fpnorm.o gcc -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c rshared.c -o rshared.o g77 -O3 -Wall -c changepoints.f -o changepoints.o changepoints.f: In subroutine `tmax1': In file included from changepoints.f:0: changepoints.f:175: warning: 'sxmxi' might be used uninitialized in this function changepoints.f:175: warning: 'wtmxi' might be used uninitialized in this function changepoints.f:175: warning: 'wtmxj' might be used uninitialized in this function g77 -O3 -Wall -c getbdry.f -o getbdry.o getbdry.f: In subroutine `getbdry': In file included from getbdry.f:0: getbdry.f:6: warning: unused variable 'k' getbdry.f:6: warning: unused variable 'i' g77 -O3 -Wall -c hybcpt.f -o hybcpt.o g77 -O3 -Wall -c prune.f -o prune.o windres -I d:/biocbld/bbs-2.1-bioc/R/include -i DNAcopy_res.rc -o DNAcopy_res.o gcc -shared -s -o DNAcopy.dll DNAcopy.def flchoose.o fphyper.o fpnorm.o rshared.o changepoints.o getbdry.o hybcpt.o prune.o DNAcopy_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lg2c -lR ... DLL made installing DLL installing R files installing demos installing inst files installing data files preparing package DNAcopy for lazy data loading installing man source files installing indices installing help >>> Building/Updating help pages for package 'DNAcopy' Formats: text html latex example chm CNA text html latex example chm DNAcopy-internal text html latex chm DNAcopy text html latex chm coriell text html latex chm cytoBand text html latex chm getbdry text html latex chm plot.DNAcopy text html latex example chm segment text html latex example chm smooth.CNA text html latex example chm subset.CNA text html latex example chm subset.DNAcopy text html latex chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\bbs-2.1-bioc\meat\DNAcopy.Rcheck\00_pkg_src\DNAcopy\chm\DNAcopy.chm Compile time: 0 minutes, 0 seconds 12 Topics 24 Local links 1 Internet link 1 Graphic Created d:\biocbld\bbs-2.1-bioc\meat\DNAcopy.Rcheck\00_pkg_src\DNAcopy\chm\DNAcopy.chm, 32,102 bytes Compression decreased file by 9,309 bytes. adding MD5 sums * DONE (DNAcopy)